Aros007844.1
Basic Information
- Insect
- Athalia rosae
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_000344095.2
- Location
- NW:84295-90091[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-113 1.1e-109 365.6 33.5 1 300 29 331 29 331 0.97 2 3 0.0037 39 2.6 2.6 122 171 331 380 329 384 0.91 3 3 0.053 5.6e+02 -1.2 5.6 195 238 363 405 351 406 0.58
Sequence Information
- Coding Sequence
- ATGGAGTCATTGGTGGCAGGACGGAGACGAACTGCCACAAGGCATTCAGCCGAGGATCAGGCTCTTGATCAAATTGCCAAAGAGGCAGAAGCTAGATTAGCAGCTCGACGTCAAGCCAGAGCAGAAGCTAGAGAAATCCGAATGCGGGAATTAGAGAGACAGCAAAAGGAAGCTGAGGAAAACGCTGATAGAGTTTATGATATGTGTACTGACATAATTACAGCTGATGCTAACCGAACCATGAGGGTGACACCTGATCCTGTGAGAACATCTCGCCTCCTCAATAATTCTAACAACTTTCAATCCAGTCGAAGGTCTTCGCAAGATTCGTTGGAAGATGCTGGACTTAATAGAGATCTTAGGttaGAAATTAAGGAATTCGAAGAAAAGTTCCGCAAGGCTATGATTACAAACGCGCAATTGGATAATGAGAAATCAACTTACTCGTATCAAGTAGATCTACTAAAAGACAAATTGGAAGAGTTAGAGGAAACAACGGCACAACTCCGCCGAGAGCTTAGAGAAAAGAATCGGGAAGCTGAACAATTGAAACGTGTAAGTCAACGGTTGAAAGAAGATTTTGACGTATGCAGGGTGCAATTATTGGAACGAGATACACTCATACAGGAAAATGGTCTTGTGATAGTCGAGGATGAAGGTGATGAAAACGATTCAGATTTGCCAGATAATGAACCCCGACCAAGGAAAAGGGTATTAGTCAGTACAGAAAGTGCAGACTTGTTACAAAATGCTGGTGAAGGTTCTTTAGATGTCCGGCTCAGAAGGTTCGCGtcggaaaagaaagaattacaGGATGAGATCCGGCATTTAAGACTGGAGTTGGAAGATGCAAAAAATCGTGTGAGATCAGAAAGGTCGCCAGGCTCAATGCTAGGAAACTTATCAGATTCTGAAGATATTCAACGGGAGGCTAATAAGCACTTAGCCGACTACAAATTCAAGTTGCAAAAAGCGGAACAGGATATGTCTACATTGCAAGCAACCGTTGCAAGGCTGGAAAGCCAAGTGATTCGATATAAATCTGCGGCAGAAGCTTCTGAAAAAGCGGAGGATGAATTGAAAGTTGAGAAGCGCAAACTACAGCGAGAgGTACGAGAATCCCAAGGGCGAGTAGAAGAACTTGAAACAGCGAATTCCCACTTACAACGGAGACTAGATAAACTTAAAAATGCCAAGTCTGCACTTCTGAAAGAACTTTGA
- Protein Sequence
- MESLVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTDIITADANRTMRVTPDPVRTSRLLNNSNNFQSSRRSSQDSLEDAGLNRDLRLEIKEFEEKFRKAMITNAQLDNEKSTYSYQVDLLKDKLEELEETTAQLRRELREKNREAEQLKRVSQRLKEDFDVCRVQLLERDTLIQENGLVIVEDEGDENDSDLPDNEPRPRKRVLVSTESADLLQNAGEGSLDVRLRRFASEKKELQDEIRHLRLELEDAKNRVRSERSPGSMLGNLSDSEDIQREANKHLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00159106;
- 80% Identity
- -