Basic Information

Insect: Apocheima hispidaria
Gene Symbol: -
Assembly: GCA_947579745.1
Location: OX388172.1:1294347-1298431[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0074 0.47 11.2 0.9 1 23 48 70 48 70 0.96

2 15 0.0061 0.39 11.5 0.3 2 23 141 163 140 163 0.95

3 15 0.00042 0.027 15.2 2.1 2 23 169 191 168 191 0.95

4 15 0.0034 0.21 12.3 0.4 1 23 196 219 196 219 0.94

5 15 0.26 16 6.4 0.4 2 23 222 244 221 244 0.92

6 15 0.0086 0.54 11.0 0.5 2 22 251 271 250 271 0.93

7 15 0.0023 0.14 12.8 0.5 1 23 329 352 329 352 0.93

8 15 1.7 1.1e+02 3.8 0.1 3 23 381 402 379 402 0.90

9 15 0.031 1.9 9.3 0.2 3 23 426 448 425 448 0.95

10 15 0.00035 0.022 15.4 0.4 3 20 455 472 453 476 0.90

11 15 0.038 2.4 9.0 2.2 1 23 481 504 481 504 0.97

12 15 0.0017 0.11 13.3 0.2 2 23 510 532 510 532 0.92

13 15 0.00039 0.025 15.3 5.5 1 23 536 559 536 559 0.97

14 15 0.00012 0.0076 16.9 0.6 2 23 566 587 565 587 0.96

15 15 0.0047 0.3 11.9 3.1 1 23 593 615 593 615 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0074	0.47	11.2	0.9	1	23	48	70	48	70	0.96
2	15	0.0061	0.39	11.5	0.3	2	23	141	163	140	163	0.95
3	15	0.00042	0.027	15.2	2.1	2	23	169	191	168	191	0.95
4	15	0.0034	0.21	12.3	0.4	1	23	196	219	196	219	0.94
5	15	0.26	16	6.4	0.4	2	23	222	244	221	244	0.92
6	15	0.0086	0.54	11.0	0.5	2	22	251	271	250	271	0.93
7	15	0.0023	0.14	12.8	0.5	1	23	329	352	329	352	0.93
8	15	1.7	1.1e+02	3.8	0.1	3	23	381	402	379	402	0.90
9	15	0.031	1.9	9.3	0.2	3	23	426	448	425	448	0.95
10	15	0.00035	0.022	15.4	0.4	3	20	455	472	453	476	0.90
11	15	0.038	2.4	9.0	2.2	1	23	481	504	481	504	0.97
12	15	0.0017	0.11	13.3	0.2	2	23	510	532	510	532	0.92
13	15	0.00039	0.025	15.3	5.5	1	23	536	559	536	559	0.97
14	15	0.00012	0.0076	16.9	0.6	2	23	566	587	565	587	0.96
15	15	0.0047	0.3	11.9	3.1	1	23	593	615	593	615	0.97

Sequence Information

Coding Sequence: ATGCCAGAAACATCGATCGAGGCACTGAGTGTTAAAACGCGGAAATACAAGGGAAAAGAGTCGTTATCAACGCGTAGAAGGAAAAATCTACAGTTACTGTTCAACAACACATCGATTATACCTTTTAAATGGCGCGGGAAGTATCTTTGCTTCTATTGTAGCAAAGATGTATCGGAATATGCCGAATTGAGGAAACATACGAGACTTCACGGCGATTGCTCGATACTAGATCATTCTTTGAAAGCTCTAAAGGGTGGAACGAATATGGAGATCAAAATTGACGTTTCGAATCTCGCTTGCACATGCGGGGAACAAAACCCTTCTCTGGATGAAATAATCAAACATCTTGAAGCGAAACACAATCTAGCATACGATAGAAATGTAGACATGGCTATAGAGGAATACAGACTCGTAGATTTGAATTGTCTAATTTGTGAAGAAAAGTTTACATATTTCGGATATTTAGTATCTCATGTGAATACGAATCATCCAAAGAATTGCCTCATTTGCGACAAATGTAACCAAAAGTTTAATAAGAAACGCGATCTGTTCTCGCATATAAAAAATTACCATAGAGAGGGGGGATATCAGTGTGAACTCTGTCCTCAGGCTTTCAGCTCGCTGAATATACTTAGAAAGCATAGAATTAATAGGCATATGACTCGATGCCACATCTGTCAGTTGAGGCTTCCCTCGGCAGCTTTGAGGCAAAAGCACATAGACTTGGAACATCCCGACGACGGATCTCTTCAATGCGACGCGTGCGACAAAGAATTCCACACAAAACAAGGGCTTAGAATGCATGCGAGAAAATGTAAAGGGGATCTCTTTCAATTGTCTATTAAAAAGGAAGACTATACAATGGACTTGGATTTGAATTACGAAGATCCGGCAAAGAAACCGAGCGTCAAGCAAATACGGGAAAATATAGTCATAGTCATAAACATGTCAACGGCAATACCTTTCAACTTTTACAAGAATAAATTCAACTGCTTTTACTGTTCAAAAGACTTTCCTGATTCGGATTCCATGAAAGAGCATACGGTTGTTGAACACCCCGTGTGTGACGTCAAAGAAAAATGCATCAGAAAGTGTAGAGAATCGGTCGCGTGTGTCAAAATTGACGTGTCAACGCTAGCATGCAAGGTTTGCTTTGAAAATATGCCGAATCTGGACAATCTGCTCGATCATCTGATAGCGAAACACGACGCCAATTACGACAAATCGATCACAACATGCCTGCAGCCTTACAGACTGATCAAGGACAACATGGCATGTCCTAACTGCCCCGGGGAAGTGTTCCGCTTCTTTGGGACGTTATTAAAACATATGAATAAAAAGCATACGAATAATAATATTATCTGCGTGTATTGCGGCGAGACGTTTCGTCGAGATCAGAATCTACGCGTTCACATTTGGAGGCATCATCGTGACGGGCGTTTCAAATGTAACATTTGCGGTGCTGACTGTAACATACCTTCTCGCCTGTACATGCATATGGCGAAGTGTCACGGTGTTAAAGCCGCTAAATGTCCGAAGTGCTCCGAAGCGTTTGCGACGCAATACCTTCGTCAAAAGCATTTGATAGACGCTCATAATTCTGGTCACAAATGCTCATACTGCAGCAAACTATTCACAAGAAACTCGTTCATGcgagaccatatcagaaggacacaccttaaggagaagaatgtcgaatgctccgtctgtaatatgaagttctttaataatgttctgttgaggagacacatggtcaagcatagcggggagaagaacttccattgcgatgtgtgtGGTGAAAGATTTTTCTGGCGGAAAAGCTTGCGGACGCATATGTCGAGGCACGCTAAACATTTGAACCCTATACATCTTTAG
Protein Sequence: MPETSIEALSVKTRKYKGKESLSTRRRKNLQLLFNNTSIIPFKWRGKYLCFYCSKDVSEYAELRKHTRLHGDCSILDHSLKALKGGTNMEIKIDVSNLACTCGEQNPSLDEIIKHLEAKHNLAYDRNVDMAIEEYRLVDLNCLICEEKFTYFGYLVSHVNTNHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYQCELCPQAFSSLNILRKHRINRHMTRCHICQLRLPSAALRQKHIDLEHPDDGSLQCDACDKEFHTKQGLRMHARKCKGDLFQLSIKKEDYTMDLDLNYEDPAKKPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMKEHTVVEHPVCDVKEKCIRKCRESVACVKIDVSTLACKVCFENMPNLDNLLDHLIAKHDANYDKSITTCLQPYRLIKDNMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGADCNIPSRLYMHMAKCHGVKAAKCPKCSEAFATQYLRQKHLIDAHNSGHKCSYCSKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNVLLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMSRHAKHLNPIHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00034068; iTF_00044739; iTF_00207208; iTF_00206353; iTF_00818536; iTF_00055882; iTF_00390646; iTF_00826090; iTF_01209581; iTF_00649359; iTF_01172629;
90% Identity: iTF_00044739;
80% Identity: -