Bbet023160.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989890.1:3880141-3895944[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.056 4.5 8.5 0.8 1 23 227 249 227 249 0.95 2 15 0.0071 0.57 11.4 0.2 2 23 321 343 320 343 0.95 3 15 0.00033 0.026 15.6 2.6 2 23 349 371 348 371 0.95 4 15 0.046 3.7 8.8 0.2 1 23 376 399 376 399 0.92 5 15 0.36 29 6.0 0.4 2 23 402 424 401 424 0.92 6 15 0.012 0.95 10.6 0.5 2 22 431 451 430 451 0.93 7 15 0.0013 0.1 13.7 0.9 1 23 509 532 509 532 0.92 8 15 9.2 7.4e+02 1.6 0.1 3 23 561 582 559 582 0.88 9 15 0.043 3.4 8.9 0.2 3 23 606 628 605 628 0.95 10 15 0.00048 0.039 15.0 0.4 3 20 635 652 633 656 0.90 11 15 0.011 0.86 10.8 0.7 1 23 661 684 661 684 0.97 12 15 0.0022 0.18 13.0 1.1 2 23 690 712 690 712 0.92 13 15 4e-05 0.0032 18.4 4.7 1 23 716 739 716 739 0.97 14 15 0.00017 0.014 16.5 0.6 2 23 746 767 745 767 0.96 15 15 0.0063 0.51 11.5 3.1 1 23 773 795 773 795 0.97
Sequence Information
- Coding Sequence
- ATGAACTTCGATGAGATAGTAGTGAAGGAGAGCCTAGGGATATGCCGGTGCTGCTTGTCCGAGGGCTGCTACAAAGACTTGGGCACCGAATACACCTGGATGAACGATACAGAAGTTTATGCTGATATGCTGTTGGATTGCTTTGATATTGGCATCACACAACACAATGATGGGCCGAATGGAGCCAAGCGCCTCATCTGTGAGGTATGCATCACAAGGCTCCGGGATGCATGTAACTTCAAGAAGCAGGTTGTGGACTCCGAGAAACGTTTCATAGACATGCTTGGGCGAGGGGAGTTCAGGACTAAAGTGTTGATGTACCAGCCACAAACTCAAATCAAACAGGAAAGTGTTGAAGAAGCGCCTGAAGATGTGATGGCAGAGGATGTGGAGTATCTGGAAGATGTGGACTTTGATAGCGATGTTTCAGAAGAGCAAGTTAAAACTGAAGCAGTTCAATCCACATCAATGGCATCGACGTCTGAGCCGAAACCAAAGCGAGGCCGGCCGCGGAAAGACTACATCAAACCAGAGCCAAAGGCGAAGAGACAGAAACTTGCTAAAGGTGTTAAAACGCGGAAATACAAAGGAACAGAGTCCTTGTCCACGCGTAGAAGGAGAAACCTACAGATTCTCTTCAACAACACTTCTATTATACCTTTTAAGTGGAGAGGGAAATATCTTTGCTTCTATTGCAGCAAAGATGTCTCAGAATACGTGGCACTGCGTAAACATACAAAACTTCATGGCGATTGCTCTATACTCGATCATTCGTTAAAAGCTCTCAAAGGTGGAACGAATATGGAGATCAAAATAGACGTTTCTAACCTTGCTTGTATATTATGCGGTGAACAATATCCTTCTTTAGTTGAAATAATAAAACATCTTGAAGCTGAACATAATCTAGAATACGATAGAAACGTAGACATGGCTATAGAAGAATATAGACTTGTAGATTTAAATTGTCTCGTTTGTGAAGAAACGTTTTCTTATTTCGGTTATTTGGTATCACACGTGAATACAAATCATCCGAAAAACTGTCTCATATGCGACAAATGCAACCAGAAGTTTAATAAGAAACGCGATCTGTTCTCGCATATGAAGAATTATCATAGAGATGGCGGATACCCATGCGAGCTTTGTCCACAGGCTTTCAACTCTCTTAATATACTCCGAAAGCATAAAATTAATAGACATTTGACTAGATGTCATATCTGTCAACTTAGGTTACCCTCGGCCGCATTGCGGCAAAAGCATATAGACTTGGAACACCCTGATGACGGGTCTCTTCAGTGCGATGCTTGCGATAAAGAATTTCACACGAAACAGGGTCTCAGAATGCATGCGAGAAAATGTAAAGGTGATCTTTTCCAACTGTCTGTCAAAAAGGAGGACTACACGATGGATTTGGATTTGAACTATGAAGACCCGGCTAAAAGACCAAGCGTGAAACAAATACGTGAAAACATTGTTATCGTCATCAACATGTCCACTGCCATACCTTTCAACTTCTACAAGAATAAATTCAACTGTTTTTACTGCTCAAAAGACTTCACAGATTCAGATTCTATGAAAGAACATACTGTCGTTGAGCATCCCGCTGTTAACGTTCAAGAGAAATGTATTAAAAAGTGTCGAGAATCCGTCGCGTGCGTCAAAATTGATGTTTCCACGCTGGCTTGCAAGGTTTGCTTTGAAAACATGCCGAGTTTGGACAGCCTTCTCGATCATTTGATCGCGAAACACGACGCCAACTATGATAAATCGATCACGACCTGCTTGCAGCCATACAGACTGGTCAAAGACAACATGGCATGTCCAAACTGTCCCGGTGAAGTGTTTCGCTTCTTTGGCACGTTACTCAAACACATGAACAAGAAACATACAAACAATAATATCATTTGTGTTTATTGCGGGGAGACGTTTCGTCGTGATCAGAATTTACGCGTTCATATTTGGAGGCATCATCGTGATGGACGTTTCAAATGTAACATTTGTGGCGCCGAGTGTAATATACCATCTCGTCTGTACATGCACATGGCGAAAACTCATGGTGTGAAAGCAGCGAAATGTCCAAAGTGTCCCGAAGCGTTTGCAACGCAATACTTACGTCAGAAACATCTGATAGATTGTCACGATTCCGGTCACAAGTGCTCGTATTGCGGAAAGTTGTTCACGAGAAATTCCTTCATGCGCGATCATATTAGAAGGACACATCTCAAAGAGAAGAATGTGGAATGCTCCGTTTGTAATATGAAATTCTTTAACAATGTGCTGTTGAGAAGGCATATGGTCAAGCATAGCGGGGAGAAGAATTTTCATTGTGAAGTGTGCGGGGAAAGATTCTTTTGGCGGAAGAGTTTACGAACGCATATGTCTAGGCACACCAAACATTTGGATTCTATTAATTTGTAG
- Protein Sequence
- MNFDEIVVKESLGICRCCLSEGCYKDLGTEYTWMNDTEVYADMLLDCFDIGITQHNDGPNGAKRLICEVCITRLRDACNFKKQVVDSEKRFIDMLGRGEFRTKVLMYQPQTQIKQESVEEAPEDVMAEDVEYLEDVDFDSDVSEEQVKTEAVQSTSMASTSEPKPKRGRPRKDYIKPEPKAKRQKLAKGVKTRKYKGTESLSTRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDVSEYVALRKHTKLHGDCSILDHSLKALKGGTNMEIKIDVSNLACILCGEQYPSLVEIIKHLEAEHNLEYDRNVDMAIEEYRLVDLNCLVCEETFSYFGYLVSHVNTNHPKNCLICDKCNQKFNKKRDLFSHMKNYHRDGGYPCELCPQAFNSLNILRKHKINRHLTRCHICQLRLPSAALRQKHIDLEHPDDGSLQCDACDKEFHTKQGLRMHARKCKGDLFQLSVKKEDYTMDLDLNYEDPAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFTDSDSMKEHTVVEHPAVNVQEKCIKKCRESVACVKIDVSTLACKVCFENMPSLDSLLDHLIAKHDANYDKSITTCLQPYRLVKDNMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKTHGVKAAKCPKCPEAFATQYLRQKHLIDCHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNVLLRRHMVKHSGEKNFHCEVCGERFFWRKSLRTHMSRHTKHLDSINL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143277;
- 90% Identity
- iTF_00044739;
- 80% Identity
- -