Basic Information

Insect: Petrophora chlorosata
Gene Symbol: -
Assembly: GCA_951640565.1
Location: OX621218.1:3263919-3265529[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.017 1.5 10.2 0.8 2 23 53 75 52 75 0.95

2 14 0.00021 0.019 16.2 2.6 2 23 81 103 80 103 0.95

3 14 0.0038 0.34 12.3 0.8 1 23 108 131 108 131 0.94

4 14 0.094 8.5 7.9 0.3 2 23 134 156 133 156 0.95

5 14 0.0078 0.7 11.3 0.5 2 22 163 183 162 183 0.93

6 14 0.0044 0.4 12.0 0.9 1 23 241 264 241 264 0.90

7 14 0.99 89 4.7 0.1 3 23 293 314 291 314 0.90

8 14 0.014 1.3 10.5 0.4 2 23 337 360 336 360 0.95

9 14 0.00031 0.028 15.7 0.4 3 20 367 384 365 388 0.90

10 14 0.0067 0.61 11.5 0.6 1 23 393 416 393 416 0.97

11 14 0.00026 0.024 15.9 0.2 2 23 422 444 422 444 0.92

12 14 2.6e-05 0.0023 19.1 4.7 1 23 448 471 448 471 0.98

13 14 0.00011 0.01 17.1 0.6 2 23 478 499 477 499 0.96

14 14 0.0031 0.28 12.5 3.0 1 23 505 527 505 527 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.017	1.5	10.2	0.8	2	23	53	75	52	75	0.95
2	14	0.00021	0.019	16.2	2.6	2	23	81	103	80	103	0.95
3	14	0.0038	0.34	12.3	0.8	1	23	108	131	108	131	0.94
4	14	0.094	8.5	7.9	0.3	2	23	134	156	133	156	0.95
5	14	0.0078	0.7	11.3	0.5	2	22	163	183	162	183	0.93
6	14	0.0044	0.4	12.0	0.9	1	23	241	264	241	264	0.90
7	14	0.99	89	4.7	0.1	3	23	293	314	291	314	0.90
8	14	0.014	1.3	10.5	0.4	2	23	337	360	336	360	0.95
9	14	0.00031	0.028	15.7	0.4	3	20	367	384	365	388	0.90
10	14	0.0067	0.61	11.5	0.6	1	23	393	416	393	416	0.97
11	14	0.00026	0.024	15.9	0.2	2	23	422	444	422	444	0.92
12	14	2.6e-05	0.0023	19.1	4.7	1	23	448	471	448	471	0.98
13	14	0.00011	0.01	17.1	0.6	2	23	478	499	477	499	0.96
14	14	0.0031	0.28	12.5	3.0	1	23	505	527	505	527	0.97

Sequence Information

Coding Sequence: ATGGAAATCAAAATTGATGTATCGAATCTCGCCTGTACTTGTGGCGATCCATTTCTCTCCTTAGACGATATTATAAAGCATTTACAAGAAAAACATAACCTAGAGTACGACAACAATGTTGACATGGCTATAGAAGAGTATAGACTCGCAGATTTGCATTGCCTCAATTGTGAAGAAAAGTTCTCTTACTTCGGCTATTTAGTGTCACACGTCAACACAATTCATCCAAAAAACTGTCTCATATGCGATAAATGCAaccaaaagtttaataaaaagagGGACCTGTTTTCGCACATGAAGAATTACCATCGGGAAGGCGGATACCAATGTGAACTCTGTCCTCAAACTTTTAACTCCTTAAACATACTGCGCAAGCATAGAATTAATAGACATATGACTCGATGCCACATCTGCCAACTGAGGCTACCATCCGCAGCGTTAAGGCAAAAGCATATAGAAATAGAACACCCCGATGATGGGTCTCTTCAATGTGACGCTTGTGATAAAGAATTCCACACGAAACAAGGTCTCAGAATGCACGCGAGAAAATGCAAAGGTGATCTATTTGAACTGTCAATAAAGAAAGAAGATTACACCATGGACTTGGATCTAAACTATGAGGACCCAACAAAGCGACCCAGCGTCAAGCAAATACGCGAAAACATAGTCACGGTCATCAATATGTCCACAGCGATACCTTTTAACTTCTACAAAAacaaattcaattgtttttactGCTCCAAAGACTTCCCCGATTCAGATTCCATGAAGGAACACACAGTTTTGACGCATCCGGTGTGTGATGTCAAAGAGAAATGTATCAGAAAATGTCGAGAATCAGTCGCGTGTGTCAAAATCGATATTTCTTCTCTAGCTTGTAAGATTTGCTTTGAAAATATGTCAGATTTGGACAGCTTACTCGATCATTTGATCGCCAAACACGAAGCAAATTACGACAAATCGATCACAACATGTTTGCAACCTTACAGACTGATAAAAGACAACATGACATGCCCTAACTGTCCCGGCGAAGTGTTTCGCTTCTTCGGAACATTGCTAAAACACATGAATAAAAAGCATACGAACAATAACATAATCTGCGTATACTGTGGCGAAACATTCAGACGAGACCAGAATCTCCGCGTTCACATATGGCGTCACCACAGAGATGGACGGTTCAAATGCAACATATGCGGCGCCGAATGCAACATACCGTCTCGTCTTTACATGCACATGGCTAAATCTCATGGCGTCAAAGCTGCGAAATGTCCTAAGTGCCCCGAAGCTTTTTCGACTCAATACCTTCGTCAGAAACATCTGATTGATGCCCATAATTCCGGTCATAAATGTTCTTACTGCGGGAAACTTTTCACTCGCAACTCTTTCATGAGAGATCACATTAGACGAACTCACTTGAAAGAGAAGAACGTGGAATGTTCCGTCTGCAATATGAAGTTCTTTAACAACGTGCTGCTAAGGAGGCATATGGTGAAGCATAGTGGAGAAAAGAATTTTCACTGCGATGTGTGCGGGGAACGCTTCTTTTGGCGCAAGAGTCTTAGGAATCATATGTCGCGGCATAATAAGCATTTGGATCACTTACATTTGTAA
Protein Sequence: MEIKIDVSNLACTCGDPFLSLDDIIKHLQEKHNLEYDNNVDMAIEEYRLADLHCLNCEEKFSYFGYLVSHVNTIHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCELCPQTFNSLNILRKHRINRHMTRCHICQLRLPSAALRQKHIEIEHPDDGSLQCDACDKEFHTKQGLRMHARKCKGDLFELSIKKEDYTMDLDLNYEDPTKRPSVKQIRENIVTVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMKEHTVLTHPVCDVKEKCIRKCRESVACVKIDISSLACKICFENMSDLDSLLDHLIAKHEANYDKSITTCLQPYRLIKDNMTCPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKSHGVKAAKCPKCPEAFSTQYLRQKHLIDAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNVLLRRHMVKHSGEKNFHCDVCGERFFWRKSLRNHMSRHNKHLDHLHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00143277;
90% Identity: iTF_00044739;
80% Identity: -