Amar009677.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- -
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000077.1:468847-474627[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.68 40 5.3 1.6 1 23 59 82 59 82 0.93 2 18 0.4 23 6.0 0.1 2 23 108 130 107 130 0.94 3 18 9.6 5.7e+02 1.6 4.0 1 23 150 176 150 176 0.59 4 18 3.3 2e+02 3.1 0.0 5 23 207 226 206 226 0.91 5 18 1.6 94 4.1 0.2 2 23 247 269 246 269 0.94 6 18 0.0058 0.34 11.8 2.7 2 23 275 297 274 297 0.94 7 18 0.00026 0.016 16.0 0.3 1 23 302 325 302 325 0.95 8 18 0.36 21 6.1 0.4 2 23 328 350 327 350 0.92 9 18 0.012 0.73 10.8 0.7 2 22 357 377 356 377 0.93 10 18 0.0032 0.19 12.6 0.5 1 23 435 458 435 458 0.92 11 18 0.72 42 5.2 0.1 3 23 487 508 485 508 0.91 12 18 0.043 2.5 9.1 0.2 3 23 532 554 531 554 0.95 13 18 0.00048 0.029 15.2 0.4 3 20 561 578 559 582 0.90 14 18 0.01 0.61 11.0 0.6 1 23 587 610 587 610 0.97 15 18 0.0024 0.14 13.0 0.3 2 23 616 638 616 638 0.92 16 18 4e-05 0.0023 18.6 4.7 1 23 642 665 642 665 0.97 17 18 0.00017 0.01 16.6 0.6 2 23 672 693 671 693 0.96 18 18 0.0063 0.38 11.7 3.1 1 23 699 721 699 721 0.97
Sequence Information
- Coding Sequence
- ATGTTCAGTCAAGGTTCACTCATAATATCCGGTAACATACCAGGGAAAACATCAATCGAGGCAGAGAATAAGTCCTCACTATCTGCCACGAAGAGAAACCGACTCATGAAGAAAAACGCTATAACGCTTCTAGAATGTTCCACTATTGTCCCTTTCAAGTGGCACAGACAAAACTACCTCTGTTTCTATTGTCATCTCACTCTGAAATCCATGGAGGAAGTGAGACAGCACACTAAAGCGGAGCATATAAAACCAAACATAAAATCAGCGGTCTCTTTCTTGAGGCGAGACGAAAAGGTCAAAGTTGATGTGTCCTCAATCGAATGTAGACTTTGCGCGAATTCGATTAGAGACCTAAACGCTCTGATCGATCATATGAAAACGGATCATAACAGAGTTTTCAGCGAAGGCGAAAATGGCTTGATACCGTACAGGATAGGAAATACCTATCATTGCGCGATTTGCGAcgaaacctttcaCAAAGATGTGTCAGAATATGCGGAGTTGAGAAAACATACGAAACTTCACGGCGATTGTTCTATTCTAGATCATTCTTTGAAAGCTTTAAAAGGTGGCACGAATATGGAGATCAAAATCGACGTTTCAGATCTTGCTTGCATATGCGGGGAACTATTCCCTTCTCTAGATGAAATAATCAAACATCTAGAGGCGAAACACAAGCTAGAATACGATAGAAACGTTGACATGGCTATAGAAGAATACAGACTTGTCGATTTAAATTGTCTCATTTGCGAAGAAAAGTTCTTATATTTCGGGTATTTAGTCTCGCACGTGAATACAAATCATCCTAAAAACTGCCTCATTTGCGACCAATGTAACCAAAAGTTTAATAAGAAGCGGGATCTGTTCTCACACAAAAAGAATTACCATAGAGACGGAGGGTACCCGTGCGAACTGTGTCCTCAGGTTTTCAACTCTCTGAATATGCTTAGAAAGCATAGAATTAATAGGCACATGACCCGATGTCACATCTGTCAATTGCGACTTCCTTCAGCAGCCTTGAGACAGAAGCATATAGACTTGGAACACCCCGACGACGGATCTCTTAAATGCGACGCGTGCGACAAAGAATTCCACACGAAACAAGGCCTCAGAATGCATGCGAGGAAATGCAAAGGAGACCTTTTCCAACTGTCTATCAAAAAAGAAGACTACAACATGGACTTGGATTTAAACTACACGGATCCGTCGAAACGACTGAGCGTTAAGCAAATACGCGAAAATATAGTGATTGTCATCAACATGTCCACGGCCATACCTTTCAACTTTTACAAGAACAAATTCAACTGTTTTTACTGTTCCAAAGACTTCCCCGATTCGGATTCTATGAAAGAACATACTGTTGTGGAACATCCCGTGTGTGACGTTAAAGAGAAATGCATCAAAAAGTGCCGAGAGTCGGTGGCGTGTGTGAAAATTGACGTTTCAACGCTAGCCTGCAAGGTTTGCTTTGAAACCATGCCGAATTTGGACAATCTACTCGACCATCTGATCGCTAAACACGACGCCAATTATGACAAATCGATTACGACCTGCTTGCAGCCTTACAGACTAATCAAAGACAACATGGCTTGCCCTAACTGCCCTGGAGAGGTGTTTCGTTTCTTTGGCACTTTACTAAAACACATGAACAAAAAGCATACGAACAACAATATTATTTGCGTTTACTGCGGCGAGACGTTTCGTCGCGACCAGAATTTACGCGTTCACATTTGGAGGCATCACCGGGATGGTCGTTTCAAATGCAATATTTGCGGCGCTGAGTGCAACATACCCTCTCGTCTGTACATGCACATGGCGAAATCTCACGGCGTGAAAGCCGCGAAATGTCCGAAGTGCTCTGAAGCGTTCGCGACTCAGTACCTTCGGCAAAAACATTTGATAGACGTTCACAACTCTGGACACAAATGTTCCTACTGCGGCAAACTCTTCACTCGAAACTCCTTCATGCGCGATCATATCAGAAGGACACACCTTAAAGAGAAGAATGTGGAATGCTCCGTCTGTAATATGAAGTTCTTTAACAACGTGCTGTTGAGGAGACATATGGTCAAGCATAGCGGAGAGAAGAATTTCCACTGTGAAGTGTGCGGCGAAAGATTCTTCTGGCGGAAAAGTTTGCGGACTCACATGTCCAGGCATACAAAAAATTTGGACCCTATAAATATATGA
- Protein Sequence
- MFSQGSLIISGNIPGKTSIEAENKSSLSATKRNRLMKKNAITLLECSTIVPFKWHRQNYLCFYCHLTLKSMEEVRQHTKAEHIKPNIKSAVSFLRRDEKVKVDVSSIECRLCANSIRDLNALIDHMKTDHNRVFSEGENGLIPYRIGNTYHCAICDETFHKDVSEYAELRKHTKLHGDCSILDHSLKALKGGTNMEIKIDVSDLACICGELFPSLDEIIKHLEAKHKLEYDRNVDMAIEEYRLVDLNCLICEEKFLYFGYLVSHVNTNHPKNCLICDQCNQKFNKKRDLFSHKKNYHRDGGYPCELCPQVFNSLNMLRKHRINRHMTRCHICQLRLPSAALRQKHIDLEHPDDGSLKCDACDKEFHTKQGLRMHARKCKGDLFQLSIKKEDYNMDLDLNYTDPSKRLSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMKEHTVVEHPVCDVKEKCIKKCRESVACVKIDVSTLACKVCFETMPNLDNLLDHLIAKHDANYDKSITTCLQPYRLIKDNMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKSHGVKAAKCPKCSEAFATQYLRQKHLIDVHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNVLLRRHMVKHSGEKNFHCEVCGERFFWRKSLRTHMSRHTKNLDPINI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143277;
- 90% Identity
- iTF_00044739;
- 80% Identity
- -