Basic Information

Insect: Plagodis pulveraria
Gene Symbol: -
Assembly: GCA_963890685.1
Location: OY982976.1:7359060-7363070[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0019 0.32 13.2 4.7 1 23 15 37 15 37 0.97

2 16 0.078 13 8.1 1.2 1 23 83 105 83 105 0.94

3 16 0.011 1.9 10.7 0.4 2 23 176 198 175 198 0.93

4 16 0.00014 0.023 16.8 2.1 2 23 204 226 203 226 0.95

5 16 0.0075 1.2 11.3 0.7 1 23 231 254 231 254 0.93

6 16 0.066 11 8.3 0.7 2 23 257 279 256 279 0.94

7 16 0.0054 0.9 11.7 0.6 2 22 286 306 285 306 0.94

8 16 0.022 3.7 9.8 0.5 1 23 363 386 363 386 0.90

9 16 0.0049 0.82 11.9 0.1 2 23 414 436 413 436 0.95

10 16 0.034 5.7 9.2 0.2 3 23 460 482 459 482 0.95

11 16 0.00035 0.058 15.5 0.4 3 20 489 506 487 510 0.90

12 16 0.0087 1.4 11.1 0.7 1 23 515 538 515 538 0.97

13 16 0.00088 0.15 14.2 0.1 2 23 544 566 544 566 0.92

14 16 3.2e-05 0.0053 18.8 4.7 1 23 570 593 570 593 0.97

15 16 0.00014 0.023 16.8 0.6 2 23 600 621 599 621 0.96

16 16 0.0053 0.89 11.8 3.1 1 23 627 649 627 649 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0019	0.32	13.2	4.7	1	23	15	37	15	37	0.97
2	16	0.078	13	8.1	1.2	1	23	83	105	83	105	0.94
3	16	0.011	1.9	10.7	0.4	2	23	176	198	175	198	0.93
4	16	0.00014	0.023	16.8	2.1	2	23	204	226	203	226	0.95
5	16	0.0075	1.2	11.3	0.7	1	23	231	254	231	254	0.93
6	16	0.066	11	8.3	0.7	2	23	257	279	256	279	0.94
7	16	0.0054	0.9	11.7	0.6	2	22	286	306	285	306	0.94
8	16	0.022	3.7	9.8	0.5	1	23	363	386	363	386	0.90
9	16	0.0049	0.82	11.9	0.1	2	23	414	436	413	436	0.95
10	16	0.034	5.7	9.2	0.2	3	23	460	482	459	482	0.95
11	16	0.00035	0.058	15.5	0.4	3	20	489	506	487	510	0.90
12	16	0.0087	1.4	11.1	0.7	1	23	515	538	515	538	0.97
13	16	0.00088	0.15	14.2	0.1	2	23	544	566	544	566	0.92
14	16	3.2e-05	0.0053	18.8	4.7	1	23	570	593	570	593	0.97
15	16	0.00014	0.023	16.8	0.6	2	23	600	621	599	621	0.96
16	16	0.0053	0.89	11.8	3.1	1	23	627	649	627	649	0.97

Sequence Information

Coding Sequence: ATGCGGGTACATTTGAAAGAGGTACATATACGCGAGAAGAATTTCTCTTGTTCTATGTGTGATCATAAGTTCTTTTCGAAGACTCAGGTGCAGAAGCATATGGTTAGGCATGTGGGGGAGAGGGTGCACGTGTGTGAAAAAACGCGGAAATACAAGGGAACCGAATCTATATCGACGCGTAGACGACGGAACCTACAGATATTGTTCAACAACACATCGATAATACCTTTTAAATGGCGCGGAAAGTACCTCTGCTTCTATTGTAGCAAAGACTTGTCGGAATATACGGAATTGCGAAAACACACCGAATTGCACGGTGATTGTTCTATCCTTGATCATTCCTTGAAAGCTTTAAAAGGGGGTACTAATATGGAAATCAAAATAGATGTCTCAAATCTCTCTTGTTCTTGCGGAGACCATTTTCAATCTCTAGACGATGTTATAAAGCATTTGGAGGATAAACACAAACTTGATTACGACAAGAATGTAGATATGCCCATAGAAGAGTACAGATTGGTTGATTTAAATTGTCTTATTTGCAATGAAAAGTTTACTTACTTCGGATATTTAGTATCTCACGTGAACAATAATCATCCCAAGAACTGTCTGATATGCGATAAATGTGATCAGAAGTTTAATAAGAAGAGAGACTTGTTTTCCCATATGAAGAATTACCATCGAGAAGGGGGGTACCAATGCGAACTCTGTCCACAGAGTTTCAACTCGTTGAATATACTTCGGAAACACAAAATCAACAGACATATGACTCGATGTCATATCTGTCAATTAAGATTACCTTCGGCCTCGTTAAGGCAAAAGCATATTGAGTTAGAACACCCTGACGACGGATCACTACAATGTGATGCTTGCGATAAAGAATTCCATACTAAACAAGGCCTCAGAATGCACGTGAGAAAATGCAAAGGAGATCTATTTGAACTTGTAAAAAAGGAAGATTACACTATGGATTTGGATCTCAACTATGAAGACCCTACAAAAAGACCCAGCGTCAAGCAAATACGCGAAAATATAGTCATTGTCATCAACATGTCAACGGCTATACCTTTCAACTTTTACAAGAATAAATTCAATTGCTTTTACTGTTCGCAAGATTTCCCCGATTCCGATTCTATGAAGGAGCACACTGTTTTAGAACACCCAGTGTGCAATATCAAAGAAAAATGTATAAGAAAGTGCCGCGAATCAGTCGCATGTGTTAAAATAGACGTATCGACTCTGACTTGTAAGGTTTGCTTCGAAAGCTTATCAGATTTGGATAATTTACTAGACCATTTGATCGTCAAACACAACGCGAATTATGACAAAACTATCACAACATGCTTGCAACCATACAGACTTATCAAAGACAATATGGCGTGTCCGAATTGTCCCGGCGAAGTGTTTCGCTTCTTCGGAACATTGCTAAAACATATGAACAAGAAGcatacgaataataatataatttgcgTGTATTGCGGCGAGTCTTTTAGACGGGATCAGAATCTGCGCGTTCATATTTGGAGACATCATCGCGATGGACGTTTTAAATGCAATATTTGCGGTGCAGAGTGCAATATACCATCTCGTCTGTACATGCACATGGCGAAAACGCACGGGGTTAAAGCCGCCAAATGTCCCAAATGCCCCGAAGCCTTTGCGACTCAGTACCTCCGACAGAAGCATTTGATAGACGCACACAATTCGGGCCACAAATGTTCATATTGCGGCAAACTTTTCACGAGAAACTCCTTCATGCGAGATCATATAAGACGGACACATCTAAAGGAGAAGAATGTCGAATGCTCTGTCTGCAATATGAAGTTCTTTAACAATGTGCTGTTGAGAAGGCACATGGTTAAACACAGTGGGGAGAAGAATTTCCATTGCGATGTTTGCGGTGAAAGATTCTTTTGGCGGAAGAGTTTGCGGACACACATGTCGAGGCATAATAAACATTTAGATGCTATgcatttgtaa
Protein Sequence: MRVHLKEVHIREKNFSCSMCDHKFFSKTQVQKHMVRHVGERVHVCEKTRKYKGTESISTRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDLSEYTELRKHTELHGDCSILDHSLKALKGGTNMEIKIDVSNLSCSCGDHFQSLDDVIKHLEDKHKLDYDKNVDMPIEEYRLVDLNCLICNEKFTYFGYLVSHVNNNHPKNCLICDKCDQKFNKKRDLFSHMKNYHREGGYQCELCPQSFNSLNILRKHKINRHMTRCHICQLRLPSASLRQKHIELEHPDDGSLQCDACDKEFHTKQGLRMHVRKCKGDLFELVKKEDYTMDLDLNYEDPTKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSQDFPDSDSMKEHTVLEHPVCNIKEKCIRKCRESVACVKIDVSTLTCKVCFESLSDLDNLLDHLIVKHNANYDKTITTCLQPYRLIKDNMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGESFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKTHGVKAAKCPKCPEAFATQYLRQKHLIDAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNVLLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMSRHNKHLDAMHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00143277;
90% Identity: iTF_00044739;
80% Identity: -