Basic Information

Gene Symbol
nfxl1
Assembly
GCA_943734865.1
Location
CALSEK010000016.1:234728-238352[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.92 7.3e+03 -3.0 1.4 14 19 216 221 216 221 0.86
2 15 0.096 7.6e+02 0.1 0.4 4 10 252 258 251 258 0.96
3 15 2.7e-08 0.00021 21.0 17.9 1 19 266 283 266 283 0.99
4 15 2 1.6e+04 -4.7 2.5 5 10 308 313 308 313 0.93
5 15 5.2e-06 0.041 13.7 14.9 1 19 319 338 319 338 0.97
6 15 6.8e-08 0.00054 19.8 16.0 1 19 373 391 373 391 0.99
7 15 1.5e-07 0.0012 18.7 14.7 1 18 427 444 427 445 0.97
8 15 0.61 4.8e+03 -2.5 0.2 7 11 460 464 460 465 0.76
9 15 3.7e-06 0.029 14.2 15.2 1 18 479 496 479 497 0.97
10 15 3.6e-09 2.9e-05 23.8 13.5 1 18 506 523 506 524 0.97
11 15 0.00082 6.5 6.7 12.1 9 19 570 580 562 580 0.90
12 15 0.13 1e+03 -0.3 5.7 3 12 593 602 583 602 0.85
13 15 4.4e-05 0.35 10.8 5.1 1 12 673 684 673 684 0.97
14 15 0.0029 23 5.0 11.5 4 18 714 728 712 729 0.92
15 15 3.9e-06 0.031 14.1 10.6 1 16 786 800 786 806 0.93

Sequence Information

Coding Sequence
ATGGCTAATCGTAATCGTAGCAAGTTTGCACCGAAAGAACAAAACGCTTGGAATGTACCGTTGCAATCCAGAAGCGAACCTGCCAGCGGAAAGCCACGGAAATCGTCCACCGGTAGTACCAGCAGCGCCAAGATGGTAACAACGCCGTCCACCACGACGGAATCCAAAATCCCGCTGCCTACGGTGTCGTCAAGCATGCTGAAGAAATCGCAGGACAAGTTTAATCAGGTGCAACGACAGCATGCTGAAACGGCGAAAAAATATGCGACCGAATACGTGTCGAGCGACGAGGAAGAGCTGGATGAAGCTGGCCGCGGAGAGTCGTATGATCTGGCCACCCGTAACATACTCGGGGACGTGTTGAAGAATTACAACGGCATTGATGCGGACGTGGGCAAAACGCAGGAATATTTGCAAAATCTGCTCGAATCACGCAATGCCGTGTGTTTGATCTGCATCGAGACGGTGAAGCGCGTAGACAGGATCTGGTCCTGTGGCGCGTGCTACACGTTCTTTCACCTCATGTGCATCCAGCGTTGGGCTAATGATAGCATGTCGATGAAGCGCATTAACCACGAGCAGCAGGAGGGCTACTACAACAACCGGGGCGAGTACATACCGAAGCCGGCACTCAATGTGCAATGGGACTGCCCGAAATGTCGCCGGGAGTATGCGCCAGGTGAAATACCACGCCACTACGAGTGTTTCTGTGGGAAGGAACGGGAACCGGCGGCCCATCCCTGGTTGATACCGCACTCTTGTGGAGAGCTGTGTGAGAAGCAGCTTAACCCAGCGTGTGGTCATACGTGCCGGCTACTGTGTCATCCCGGACCGTGCCCACCGTGTCCGCAGACGATCAGTGTATCGTGCCGTTGTGGCGTTTCGCCGCTAAAAACGATCCGCTGTGCACAGAAAACGTGGACCTGCACCAAAAAGTGTAAACAAACACTTAGCTGCGGATTACACGAATGTGCCACGCAGTGTCACGATCCGGGCAACTGTCCGCCGTGCCAGAATCGTAGCAAGCAGTCGTGTCTATGCGGAGCACAAACCAAAGAGGTCAACTGTCACGAATCACGCTGGCAGTGTGGTAGCGTATGCAATAAATCGCTACCATGTGGTCTACATCAGTGCGAACGCGTCTGTCACGGTGGTCCTTGTGGTGATTGTCCGCTTGGTTTGCCCCGTTCCTGCCCGTGCGGTAAATCGGAAACACGTGCCGCATCCTGTGCCGAGCGGATCGGAACGTGTGGTGATACGTGCGATAAGTTGCTCGCCTGCGGACAACACCGCTGCCCGGAACGATGCCATCAAGGAGCGTGTGGCAACTGTTTGGAACTGGTGCCGAAAGTTTGCCGCTGTGGTTCAACGAAAAAGCAGGTCGTCTGCCACCGGGAAGCGATTTGCGAGGGTCGCTGCAAACGGATGCGCACCTGTGGCAAGCATCAGTGCAATCGGAAATGCTGCGATGGGCAGTGTCAGCTGTGTGATCGGGTGTGTGGGAAGACGCTGCCTTGCGGGAAGCACAAGTGCAGCTCGATGTGCCATCAGGGTCCGTGCTATCCGTGTAATCAAAAATCGACAGTGAAATGTCGCTGTGGTGGCACAGTGGTGGAAGTAGCGTGTGGTCGCGAAAGAAAAACGAACGCACCGAAATGTAAACTACTCTGCCGGGTGGCCTCCAAATGTCATCATCCCAATACACACCTTTGCCACACCGGCGAATGTCCACCGTGTACACAGCCATGCGGCGAGCGGAATGATACGACCAACTGTGAGCATCCGTGCCGGGCCAAGTGTCACGATGCGGTACGGGTGGTGACGCGTGACAAAAACTTCAAGCCCGCCGGTCCATGGGATGTTCCGCAGGAGATTGTCGAAGTGAAAGCTCTGCCACATCCGCCCTGTAGCGAGAAGGTACCGGTGATGTGTCTCGGTGGGCACGAAACGGCCGATTGGCCATGCTCCAATTCGAAACCTTCGTCGTGTGGTAGACCGTGCGATCGATTGTTGAAGTGTGGCGTTCACCGTTGTCCGCTGCCCTGCCACAAGGTAACACATCGGGCCAGCACGACACAGGACTCGCGGTGTGAAGCATGTACCGCCGGATGTACGCTCGCCCGTCCGGATGGATGTGTGCATCCGTGTACGCTGGCCTGCCACAAAGCGCCGTGCAATCCGTGTCTGGTGTCGATCAAGGCGAACTGTTACTGTGGCCTCACGCAGGTGTTTTATAAATGCCACGAGTTTTATCCTTCCGATATAGAGGGTAAGGGTCCGGAAGAGTTGGCAGAGTTGAACGTTAGGCGCGAATCCTTTCTTAGCTGTGGTCAGAAGTGTATCAAGAATTTCCCTTGCGGGCATCGTTGCTTTTCCATCTGCCATCCCGGACGCTGCCCGAATCCGGAGCTTTGCACGAAAAAGGTAAAAATAAGCTGCAAATGTGCTCATCGAAAGGCGGAAGTGTCGTGCAAGGTGGCGCGCAACAATTCCACGCTCGACTGTGACCAACAGTGTGAAGCAATCCGTGCCCAGAAGCAGGAGGAACAGGAGCGCAAGGAACGGGAAGAGCGAGCCCAACAGGAGCTCGAGAATCAGCGCGAACTGGAAGAGTTTGAGCGCAAGTTTAACAAACGAAAGTACCGCGAAAGGAAACGGCATCAGGTGCAGGAGGAGGCAAAGGGGCGACATTGGGCTGTGTACGTGGTGCCGATTGTGGCTGTGTTGATAGGTGTAGTTTTATATGTTTGGTTTGTGCAATAA
Protein Sequence
MANRNRSKFAPKEQNAWNVPLQSRSEPASGKPRKSSTGSTSSAKMVTTPSTTTESKIPLPTVSSSMLKKSQDKFNQVQRQHAETAKKYATEYVSSDEEELDEAGRGESYDLATRNILGDVLKNYNGIDADVGKTQEYLQNLLESRNAVCLICIETVKRVDRIWSCGACYTFFHLMCIQRWANDSMSMKRINHEQQEGYYNNRGEYIPKPALNVQWDCPKCRREYAPGEIPRHYECFCGKEREPAAHPWLIPHSCGELCEKQLNPACGHTCRLLCHPGPCPPCPQTISVSCRCGVSPLKTIRCAQKTWTCTKKCKQTLSCGLHECATQCHDPGNCPPCQNRSKQSCLCGAQTKEVNCHESRWQCGSVCNKSLPCGLHQCERVCHGGPCGDCPLGLPRSCPCGKSETRAASCAERIGTCGDTCDKLLACGQHRCPERCHQGACGNCLELVPKVCRCGSTKKQVVCHREAICEGRCKRMRTCGKHQCNRKCCDGQCQLCDRVCGKTLPCGKHKCSSMCHQGPCYPCNQKSTVKCRCGGTVVEVACGRERKTNAPKCKLLCRVASKCHHPNTHLCHTGECPPCTQPCGERNDTTNCEHPCRAKCHDAVRVVTRDKNFKPAGPWDVPQEIVEVKALPHPPCSEKVPVMCLGGHETADWPCSNSKPSSCGRPCDRLLKCGVHRCPLPCHKVTHRASTTQDSRCEACTAGCTLARPDGCVHPCTLACHKAPCNPCLVSIKANCYCGLTQVFYKCHEFYPSDIEGKGPEELAELNVRRESFLSCGQKCIKNFPCGHRCFSICHPGRCPNPELCTKKVKISCKCAHRKAEVSCKVARNNSTLDCDQQCEAIRAQKQEEQERKEREERAQQELENQRELEEFERKFNKRKYRERKRHQVQEEAKGRHWAVYVVPIVAVLIGVVLYVWFVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2