Basic Information

Insect: Anopheles funestus
Gene Symbol: -
Assembly: None
Location: Contig0:14344323-14373055[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.4 1.3e+04 -3.8 0.0 13 30 65 82 63 83 0.77

2 14 0.0012 4.5 7.2 0.0 21 44 101 124 93 133 0.86

3 14 0.0028 10 6.0 0.1 23 47 131 155 128 160 0.83

4 14 0.0069 26 4.8 0.1 23 48 159 184 155 189 0.85

5 14 0.0076 28 4.7 0.1 23 48 187 212 183 217 0.85

6 14 0.004 15 5.5 0.0 23 52 215 244 213 246 0.87

7 14 0.49 1.8e+03 -1.1 0.0 23 49 243 269 239 274 0.81

8 14 0.018 66 3.5 0.0 23 49 271 297 266 302 0.85

9 14 0.48 1.8e+03 -1.1 0.0 23 52 299 328 296 329 0.83

10 14 0.59 2.2e+03 -1.4 0.0 23 49 327 353 324 358 0.80

11 14 0.091 3.4e+02 1.2 0.0 23 52 355 384 352 386 0.86

12 14 0.025 91 3.0 0.0 23 48 383 408 379 412 0.84

13 14 0.026 95 3.0 0.0 21 45 409 432 407 438 0.87

14 14 0.00022 0.8 9.6 0.2 23 44 439 460 436 466 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.4	1.3e+04	-3.8	0.0	13	30	65	82	63	83	0.77
2	14	0.0012	4.5	7.2	0.0	21	44	101	124	93	133	0.86
3	14	0.0028	10	6.0	0.1	23	47	131	155	128	160	0.83
4	14	0.0069	26	4.8	0.1	23	48	159	184	155	189	0.85
5	14	0.0076	28	4.7	0.1	23	48	187	212	183	217	0.85
6	14	0.004	15	5.5	0.0	23	52	215	244	213	246	0.87
7	14	0.49	1.8e+03	-1.1	0.0	23	49	243	269	239	274	0.81
8	14	0.018	66	3.5	0.0	23	49	271	297	266	302	0.85
9	14	0.48	1.8e+03	-1.1	0.0	23	52	299	328	296	329	0.83
10	14	0.59	2.2e+03	-1.4	0.0	23	49	327	353	324	358	0.80
11	14	0.091	3.4e+02	1.2	0.0	23	52	355	384	352	386	0.86
12	14	0.025	91	3.0	0.0	23	48	383	408	379	412	0.84
13	14	0.026	95	3.0	0.0	21	45	409	432	407	438	0.87
14	14	0.00022	0.8	9.6	0.2	23	44	439	460	436	466	0.91

Sequence Information

Coding Sequence: ATGTTCTATCCGCTGCAAACCCAATTCGATGATGGTGTAATCGAGCTAACTCGTTCCGAAATGCTACAGCAGGATCCGCTAGCAGACAATAAGCATTTCGTGGTATCGCTGTCCCTGGGCAATACGCTAATCAATCTCAACAAAATCAAGTGTCCACAATGCCGGAAGCGTTTTGATACGATGGAAGAGATGGAACAGCACCGGACCAAACATTTGACGGAGAACAAGTTTAAATGCGAGATTTGTAGTAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCGCACACCGGTGAACGTCCTTTCGTGTGTCAGATATGCAACAAAGGCTTCACTCAGCTGGCCAACCTTCAGCGACATGATCTCGTCCACAATGGACTAAAGCCGTTCAAGTGTCCAATTTGTGAAAAATGTTTCACGCAGCAAGCTAACATGCTAAAACATCAACTCCTACATACCGGACTTAAACCATACAAATGTCCCGTGTGCGAGAAAGCATTTTCGCAACATGCAAACATGGTCAAACATCAAATGCTTCATACAGGTTTGAAGCCTTACAAGTGTCCCGTTTGCGAAAAAGCATTTACGCAACACGCCAACATGATCAAGCATCAAATGTTACATACCGGTCTTAAACCATACAAATGTCCTGTTTGTGAGAAGGCCTTCACTCAACAGGCTAACATGGTGAAACATCAAATGTTGCACACCGGCGTAAAACCGTACAAATGTTCCACTTGTGGAAAGGCATTTGCTCAGCAGGCCAACATGGTTAAACACGAGATGCTTCATACCGGTATTAAACCGTACAAGTGTCCCACCTGTGACAAAGCATTTGCCCAGCAAGCAAACATGATGAAACATCAAATGTTGCATACGGGCCTAAAACCGTACAAGTGTGGTACATGTGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAACATCAGATGCTCCATACCGGTATAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCACAGCAGGCCAACATGGTTAAACACGAGATGCTTCATACCGGAATAAAACCTTACAAATGTTCGGTTTGCGATAAAGCCTTTGCCCAGCAGGCCAACATGGTTAAACATCAGATGCTCCACAGCGGAATCAAACCGTACAAATGTCCAACTTGCGATAAAGCATTTGCTCAACAGGCAAACATGGTTAAGCATCAGATGCTCCATACGGGGGAAAAACCATTCAAATGCAAAAGCTGTGATAAGGCTTTCTCACAAAATGCCAATCTGAAAAAGCACGAAATGGTACATCTCGGCATACGGCCACACACCTGCCCGCTGTGTCCGAAGTCCTATTCGCAGTATTCAAATTTGAAGAAACATTTGCTGAGCCATCAGAAGCAAGCGATTAAGCAGGAGCAACAAAACGGTCAGGTGATGGCCATTCTCTACAGCTGCCAGACGTGCAAGATGCAGTTTGAGGATATCATCGAGTTTGAGCGCCACACCAGACACTGTGGCATTAACAGCGTACAGCAACACAGTGTCAAATTGGAAAACATTAAGAGCGAGGTAGACATCGACGGTAGCTCGAATTCGGGTATGCAGCAACATATTTCCACCACCAATGGCGGTGCAGCAAATGGTGGAAACGGTATCAGTGTTAGTCAATCGCAACCACCAACTCCGATGCATATTCCGTCAGCCATCCTTACCTCAGTCATCTCTTCGTCGGTTGGTTCTAACGTAACCCCGCACAACCTAGCACCCACGGCCCATTCGCATCACGGGCATGTGACAACAAACGGAATACTATCCGGTATTCCGACCGGCCATCCACACGCTCAACAACAACACTCCCCACCAAGTGTCGGTCTTCCTCAGCATCCTTCCGCTCACGCACAACAACAGCAGCAGCAACAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAACAGGCACACCAGCAGCAACAACAGCAGGGACATCCACAACAGCAGCAACTTTCACCACTCAGTAGCCACCAGCAGCATCTAATACTGCAGCAGCAGCACAACCTTCCGATCCATCTACAGCAGCAGCTATCGCACCATCTGATTAGTTCACACCTGCCTCATCCGCAGGATCACGGTGCGTCCGGCGACCTTCACCATCAGGTGAACTTCCACCATCCGCACATCTCGCACCTGCCGAACATATCGCACAAGATCCTTTCACCGCTGTTTCACATTCCGCCGTTCAACAACAATCACAGCACATAA
Protein Sequence: MFYPLQTQFDDGVIELTRSEMLQQDPLADNKHFVVSLSLGNTLINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQHANMIKHQMLHTGLKPYKCPVCEKAFTQQANMVKHQMLHTGVKPYKCSTCGKAFAQQANMVKHEMLHTGIKPYKCPTCDKAFAQQANMMKHQMLHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGIKPYKCNTCGKAFAQQANMVKHEMLHTGIKPYKCSVCDKAFAQQANMVKHQMLHSGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQNANLKKHEMVHLGIRPHTCPLCPKSYSQYSNLKKHLLSHQKQAIKQEQQNGQVMAILYSCQTCKMQFEDIIEFERHTRHCGINSVQQHSVKLENIKSEVDIDGSSNSGMQQHISTTNGGAANGGNGISVSQSQPPTPMHIPSAILTSVISSSVGSNVTPHNLAPTAHSHHGHVTTNGILSGIPTGHPHAQQQHSPPSVGLPQHPSAHAQQQQQQQQQQQQQQQQQQQQAHQQQQQQGHPQQQQLSPLSSHQQHLILQQQHNLPIHLQQQLSHHLISSHLPHPQDHGASGDLHHQVNFHHPHISHLPNISHKILSPLFHIPPFNNNHST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00101811; iTF_00099367; iTF_00099138; iTF_00092938; iTF_00092285; iTF_00108533; iTF_00093594; iTF_00093862; iTF_00099999; iTF_00099799;
90% Identity: iTF_00101811; iTF_00108533; iTF_00093594; iTF_00093862; iTF_00099999; iTF_00099799;
80% Identity: iTF_00101811;