Basic Information

Insect: Anopheles arabiensis
Gene Symbol: -
Assembly: GCA_016920715.1
Location: NC:101140619-101162984[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.4 1e+04 -3.8 0.0 13 30 45 62 43 63 0.77

2 15 0.0013 3.9 7.2 0.1 21 43 81 103 73 112 0.86

3 15 0.0027 8.2 6.1 0.2 23 47 111 135 107 140 0.84

4 15 0.0068 21 4.8 0.1 23 48 139 164 135 169 0.85

5 15 0.0075 23 4.7 0.1 23 48 167 192 163 197 0.85

6 15 0.0057 17 5.1 0.0 23 49 195 221 193 226 0.84

7 15 0.66 2e+03 -1.5 0.0 24 47 224 247 221 252 0.79

8 15 0.018 54 3.5 0.0 23 49 251 277 246 282 0.85

9 15 0.55 1.7e+03 -1.3 0.0 23 48 279 304 275 309 0.82

10 15 0.62 1.9e+03 -1.5 0.0 23 48 307 332 304 337 0.80

11 15 0.087 2.6e+02 1.3 0.0 23 52 335 364 331 366 0.86

12 15 0.024 74 3.0 0.0 23 48 363 388 359 392 0.84

13 15 0.024 74 3.0 0.0 21 45 389 412 386 418 0.87

14 15 0.00011 0.33 10.6 0.1 23 44 419 440 416 446 0.91

15 15 1.9 5.7e+03 -3.0 0.3 32 45 661 674 646 679 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.4	1e+04	-3.8	0.0	13	30	45	62	43	63	0.77
2	15	0.0013	3.9	7.2	0.1	21	43	81	103	73	112	0.86
3	15	0.0027	8.2	6.1	0.2	23	47	111	135	107	140	0.84
4	15	0.0068	21	4.8	0.1	23	48	139	164	135	169	0.85
5	15	0.0075	23	4.7	0.1	23	48	167	192	163	197	0.85
6	15	0.0057	17	5.1	0.0	23	49	195	221	193	226	0.84
7	15	0.66	2e+03	-1.5	0.0	24	47	224	247	221	252	0.79
8	15	0.018	54	3.5	0.0	23	49	251	277	246	282	0.85
9	15	0.55	1.7e+03	-1.3	0.0	23	48	279	304	275	309	0.82
10	15	0.62	1.9e+03	-1.5	0.0	23	48	307	332	304	337	0.80
11	15	0.087	2.6e+02	1.3	0.0	23	52	335	364	331	366	0.86
12	15	0.024	74	3.0	0.0	23	48	363	388	359	392	0.84
13	15	0.024	74	3.0	0.0	21	45	389	412	386	418	0.87
14	15	0.00011	0.33	10.6	0.1	23	44	419	440	416	446	0.91
15	15	1.9	5.7e+03	-3.0	0.3	32	45	661	674	646	679	0.81

Sequence Information

Coding Sequence: ATGCTCCAGCAGGATCATCTGGTTGACAATAAGCATTTTGTCGTGTCGCTATCCCTGGGCAATACGCTTATCAATCTCAACAAAATCAAGTGTCCACAGTGCCGGAAGCGTTTCGATACGATGGAGGAAATGGAACAGCACCGGACGAAGCATTTGACGGAGAACAAGTTTAAGTGCGAAATATGCAGCAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCACACACGGGCGAACGTCCTTTCGTTTGTCAGATTTGTAACAAAGGCTTCACCCAACTGGCCAACCTGCAACGACATGATCTCGTCCACAATGGACTAAAGCCGTTCAAGTGTCCCATCTGTGAAAAATGCTTTACCCAGCAAGCCAACATGCTGAAACATCAACTTCTGCATACCGGTCTTAAGCCGTACAAATGTCCGGTGTGCGAGAAAGCGTTCTCGCAACATGCAAACATGGTCAAACATCAAATGCTTCATACAGGATTAAAGCCGTACAAGTGTCCCGTTTGCGAAAAGGCATTTACGCAACACGCCAACATGattaaacatcaaatgttACATACTGgtcTCAAGCCATACAAATGTCCTGTTTGTGATAAAGCCTTTACGCAGCAGGCCAACATGGTGAAACATCAAATGTTGCACACCGGCCTTAAACCGTACAAATGTTCCACCTGTGGCAAGGCGTTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGgtATTAAACCGTACAAGTGTCCCACCTGTGACAAAGCATTTGCCCAGCAAGCGAACATGATGAAGCATCAAATGTTGCACACGGGATTGAAGCCGTACAAGTGCGGCACGTGCGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAGCATCAGATGCTGCATACCGGTTTAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGAATAAAGCCATACAAATGCTCGGTTTGTGATAAAGCCTTTGCCCAGCAGGCCAACATGGTCAAACATCAGATGCTCCACAGCGGAATCAAACCATACAAATGTCCTACCTGCGACAAAGCATTTGCCCAGCAGGCGAACATGGTGAAGCATCAGATGCTCCATACGGGAGAGAAACCATTCAAATGCAAAAGCTGTGATAAGGCTTTCTCACAAAACGCCAATCTGAAAAAGCACGAAATGGTACATCTCGGCATACGGCCCCACACCTGCCCGCTGTGCACGAAGTCCTACTCGCAGTATTCGAACCTGAAGAAGCATTTGCTGAGCCACCAGAAGCAGGCGATCAAGCAGGAGCAACAGAACGGTCAGGTGATGGCTATCCTCTACAGCTGCCAGACGTGCAAGATGCAGTTTGAGGATATCATCGAGTTCGAGCGCCACACCAGACGGTGCGGCATCAGCaccgtgcagcagcacagcgtgAAGCTGGAAAACATCAAGAGCGAGGTGGATATCGATGGCAGCTCCAACTCGggcatgcagcagcagcaacagcagcagcaacagcagcagcacattaTTACCACCTCCAATGCCACGAATGGCAACGGGATCAGCGTCAGCCAGTCGCAACCGCCGACCCCGATGCACATTCCGTCGGCCATCCTTACCTCCGTCATCTCGTCGTCGGTCGGCTCGAACGTGACCGCGCACAATCTGGTGTCGGCCCACTCGCACCACGGCGGCCATGTGACGACCAACGGGGGCCTCCTGTCCGGCGGCATTCCCACCGGCCATCCGcacgcccagcagcagcacaccccACCCGGTGTGGGCGGGCTTCCCCAGCAGCATCCTTCCGCTCAcgctcaacagcagcagcagcagcagcaacaacaagcccatcagcagcagcagcaagctcatcaacagcagcaacagcagcagcaactgtcACCGCTCAGcagccaccagcagcatctggtgctgcagcagcagcacaacctGCCCATccatctgcagcagcagctgtcccACCATCTGATCAGCAGCCATCTGCCCCACCCGCAGGACCATGGCGGTGCGGGCGGTGGGGGCGGCGGCGACCTGCACCATCAGGTGAACTTTCACCATCCGCACATCTCCCACCTGCCGAACATATCGCACAAGATCCTGTCGCCGCTGTTCCACATTCCGCcgttcaacaacaaccacagcacATAA
Protein Sequence: MLQQDHLVDNKHFVVSLSLGNTLINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQHANMIKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGLKPYKCSTCGKAFAQQANMVKHEMLHTGIKPYKCPTCDKAFAQQANMMKHQMLHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGLKPYKCNTCGKAFAQQANMVKHEMLHTGIKPYKCSVCDKAFAQQANMVKHQMLHSGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQNANLKKHEMVHLGIRPHTCPLCTKSYSQYSNLKKHLLSHQKQAIKQEQQNGQVMAILYSCQTCKMQFEDIIEFERHTRRCGISTVQQHSVKLENIKSEVDIDGSSNSGMQQQQQQQQQQQHIITTSNATNGNGISVSQSQPPTPMHIPSAILTSVISSSVGSNVTAHNLVSAHSHHGGHVTTNGGLLSGGIPTGHPHAQQQHTPPGVGGLPQQHPSAHAQQQQQQQQQQAHQQQQQAHQQQQQQQQLSPLSSHQQHLVLQQQHNLPIHLQQQLSHHLISSHLPHPQDHGGAGGGGGGDLHHQVNFHHPHISHLPNISHKILSPLFHIPPFNNNHST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00102068;
90% Identity: iTF_00102068;
80% Identity: iTF_00093594;