Basic Information

Insect: Anopheles epiroticus
Gene Symbol: -
Assembly: GCA_000349105.1
Location: KB671809:226368-237625[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.4 9.4e+03 -3.7 0.0 13 30 45 62 43 63 0.77

2 15 0.0011 4.4 6.9 0.1 21 43 81 103 73 110 0.89

3 15 0.0018 7.1 6.2 0.2 23 47 111 135 108 141 0.83

4 15 0.0049 19 4.9 0.1 23 48 139 164 136 169 0.85

5 15 0.0051 20 4.8 0.1 23 49 167 193 163 198 0.85

6 15 0.0031 12 5.5 0.1 23 52 195 224 191 226 0.86

7 15 0.013 50 3.5 0.0 23 49 223 249 219 254 0.85

8 15 0.41 1.6e+03 -1.3 0.0 24 48 252 276 249 282 0.82

9 15 0.41 1.6e+03 -1.3 0.0 23 49 279 305 275 310 0.81

10 15 0.064 2.5e+02 1.3 0.0 23 52 307 336 303 337 0.85

11 15 0.015 60 3.3 0.0 23 51 335 363 331 365 0.84

12 15 0.017 68 3.1 0.0 21 46 361 385 359 391 0.87

13 15 7.8e-05 0.3 10.6 0.1 23 44 391 412 388 418 0.91

14 15 1.6 6.1e+03 -3.1 0.1 17 28 506 516 504 520 0.68

15 15 1.4 5.6e+03 -3.0 0.1 33 45 636 648 622 653 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.4	9.4e+03	-3.7	0.0	13	30	45	62	43	63	0.77
2	15	0.0011	4.4	6.9	0.1	21	43	81	103	73	110	0.89
3	15	0.0018	7.1	6.2	0.2	23	47	111	135	108	141	0.83
4	15	0.0049	19	4.9	0.1	23	48	139	164	136	169	0.85
5	15	0.0051	20	4.8	0.1	23	49	167	193	163	198	0.85
6	15	0.0031	12	5.5	0.1	23	52	195	224	191	226	0.86
7	15	0.013	50	3.5	0.0	23	49	223	249	219	254	0.85
8	15	0.41	1.6e+03	-1.3	0.0	24	48	252	276	249	282	0.82
9	15	0.41	1.6e+03	-1.3	0.0	23	49	279	305	275	310	0.81
10	15	0.064	2.5e+02	1.3	0.0	23	52	307	336	303	337	0.85
11	15	0.015	60	3.3	0.0	23	51	335	363	331	365	0.84
12	15	0.017	68	3.1	0.0	21	46	361	385	359	391	0.87
13	15	7.8e-05	0.3	10.6	0.1	23	44	391	412	388	418	0.91
14	15	1.6	6.1e+03	-3.1	0.1	17	28	506	516	504	520	0.68
15	15	1.4	5.6e+03	-3.0	0.1	33	45	636	648	622	653	0.84

Sequence Information

Coding Sequence: ATGCTCCAGCAGGATCCTCTGGCTGACAATAAACATTTTGTCGTATCGCTGTCCCTGGGCAATACGCTTATCAATCTCAACAAAATCAAGTGTCCGCAATGCCGGAAGCGGTTTGATACGATGGAGGAGATGGAACAGCACCGGACCAAGCATTTAACCGAGAACAAGTTTAAATGCGAAATTTGTAGTAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCGCACACTGGTGAACGTCCTTTCGTGTGTCAGATTTGCAACAAAGGCTTCACCCAATTAGCCAACCTACAACGACATGATCTCGTCCACAATGGACTTAAGCCGTTCAAATGTCCGATTTGTGAAAAATGCTTTACCCAACAAGCCAACATGTTGAAACATCAACTTCTTCATACCGGACTCAAACCGTATAAGTGTCCGGTGTGTGAAAAAGCATTCTCGCAACATGCAAACATGGTCAAACATCAAATGCTTCATACAGGATTAAAACCGTACAAGTGTCCGGTTTGCGAAAAGGCATTTACGCAACACGCCAACATGATAAAACATCAAATGTTACATACTGGTCTCAAACCCTACAAATGTCCTGTTTGTGAAAAGGCCTTTACGCAGCAGGCCAACATGGTGAAACATCAAATGTTGCACACCGGTATTAAAccgtacaagtgtcccacctgtgacaaagcatttgcccagcaagcgaacatgatgaagcatcaaatgttgcacacggGGTTGAAGCCTTACAAGTGCGGCACGTGCGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAACATCAGATGCTTCATACCGGTTTAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGAATAAAACCATACAAATGTTCGGTTTGTGAAAAAGCCTTTGCCCAGCAGGCCAACATGGTCAAACATCAGATGCTTCACAGCGGAATCAAACCGTACAAATGTCCCACTTGCGATAAGGCATTTGCTCAGCAGGCAAACATGGTCAAGCATCAGATGCTCCATACTGGAGAGAAACCGTTCAAATGCAAAAGCTGTGATAAGGCTTTCTCGCAAAACGCCAATCTGAAAAAGCACGAAATGGTACATCTAGGCATACGGCCCCACACCTGCCCACTGTGCACGAAGTCCTACTCGCAGTATTCAAATTTGAAGAAGCATTTGCTGAGCCACCAGAAGCAGGCGATCAAGCAGGAGCAACAGAACGGTCAGGTGATGGCCATACTCTACAGCTGCCAGACGTGCAAGATGCAGTTTGAGGATATCATCGAGTTCGAGCGTCACACCAGACGGTGCGGCCTCAACACTGTACAGCAGCATAGCGTGAAGCTGGAAAACATTAAGAGTGAGGTTGACATCGATGGCAGCTCCAATTCGGGCATgcagcagcagcagcagcaacagcaCATTGCCACTACGAATGCTACAAATGGGAATGGTATCAGCGTTAGCCAGTCGCAACCACCAACCACGCCGATGCACATTCCTTCGGCCATCCTTACCTCCGTCATCTCGTCGTCGATCGGTTCGAACGTAACCGCACACAATCTGGCGCAAGCCCACTCGCACCATGGACACGTGACGAGCAATGGTGGCATTCTGTCCGGCATTCCTACCGGTCATCCGCACGCCCAACAGCAGCACACCCCTCCCGGTGTCGGGGGTCTTCCTCAGCATCCTTCCGCCCATGCTcagcagcagcagcagcagcagcaacaacaacaacagcaacaacagcaacaagctcatcaacagcaacagcaagcacatcagcaacaacagcagcaacagcagcagcagctatcaccgcttggcagccaccagcagcatctggtgctgcagcagcagcacaacctaccgatccatctccagcagcagctgtcgcaccaTCTGATCAGCTCCCATTTGCCTCACCCGCAGGATCACGGCGGGTCGGGCGATCTTCACCACCAGGTGAACTTTCACCATCCGCACATCTCCCACCTGCCGAACATATCGCACAAGATTCTGTCGCCACTGTTCCACATTCCGCCGTTCAACAACAACCACAGCACATAA
Protein Sequence: MLQQDPLADNKHFVVSLSLGNTLINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQHANMIKHQMLHTGLKPYKCPVCEKAFTQQANMVKHQMLHTGIKPYKCPTCDKAFAQQANMMKHQMLHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGLKPYKCNTCGKAFAQQANMVKHEMLHTGIKPYKCSVCEKAFAQQANMVKHQMLHSGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQNANLKKHEMVHLGIRPHTCPLCTKSYSQYSNLKKHLLSHQKQAIKQEQQNGQVMAILYSCQTCKMQFEDIIEFERHTRRCGLNTVQQHSVKLENIKSEVDIDGSSNSGMQQQQQQQHIATTNATNGNGISVSQSQPPTTPMHIPSAILTSVISSSIGSNVTAHNLAQAHSHHGHVTSNGGILSGIPTGHPHAQQQHTPPGVGGLPQHPSAHAQQQQQQQQQQQQQQQQQAHQQQQQAHQQQQQQQQQQLSPLGSHQQHLVLQQQHNLPIHLQQQLSHHLISSHLPHPQDHGGSGDLHHQVNFHHPHISHLPNISHKILSPLFHIPPFNNNHST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00102068;
90% Identity: iTF_00102068;
80% Identity: iTF_00099799;