Avir003342.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001483:101271-105853[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.011 0.83 9.8 0.1 22 45 170 193 164 200 0.86 2 8 0.11 9.1 6.5 0.0 21 48 197 224 193 228 0.86 3 8 0.0025 0.2 11.8 0.1 21 47 225 251 223 256 0.86 4 8 1.2 98 3.2 0.0 21 44 253 276 249 280 0.89 5 8 0.0033 0.26 11.4 0.0 21 45 281 305 270 309 0.84 6 8 0.37 30 4.8 0.0 21 44 309 332 306 336 0.91 7 8 0.017 1.3 9.2 0.2 21 44 337 360 333 364 0.90 8 8 0.03 2.4 8.3 0.1 21 50 365 394 361 396 0.87
Sequence Information
- Coding Sequence
- ATGGATGATTCTTCTATAAATTCTGTCATTATTAAAAGTGAAAATGAAATTTCTAGTCAAACTAATCAAGAGATCAATATTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCCAGATTTTCATGAAGAAATAAATTTAGAGCGAAGCATCAAAAGATATTCGAGGAAACAGGATCCAAGTTGTAAAAAACGTTTTCTATCAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTCGTCTATGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAGAAGGAATTATTCTGGCATAAAGCATATTAACCGACAAGATCTTAGTAATTTAAACAAACAGATAAGGGCGAACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCAAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACAATCCAATAATTTAAAAAGTCATGTTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCGGTCATTTAAAATCTCATATTAAAATTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACAGATTCCAGTAATTTAAAAAGGCATGTTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAATTATGTTCGAAGTGTTTCATACAATTGGGTAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAGACAATCCGGTCATTTAAAAACTCATGTTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTAATTTAAAAATTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAAACATTCCAGTCACTTAAAACGACATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTCATTTAAAAACTCATATTAAAACTCACAAACTCACAAAAAGCTTTTTAAATATTAAATTTGATCAAAATATTTTATAG
- Protein Sequence
- MDDSSINSVIIKSENEISSQTNQEINIEFDIKKEELHSVCDLPDFKMEFPDFHEEINLERSIKRYSRKQDPSCKKRFLSAAKKWQPHFGKFYGTCSSCGKFVYDKLLFLNHFYIYHFFVNSKKSVNLRRNYSGIKHINRQDLSNLNKQIRANSFTQQSDLKKYIKTHNGKKPFKCKICSKCFTQSNNLKSHVRTHTGEKPFKCKLCSKCFTQSGHLKSHIKIHTDEKPFKCKICSKCFTDSSNLKRHVRTHTNEKPFKCKLCSKCFIQLGNLKSHVRTHTDEKPFKCKICSKCFRQSGHLKTHVKTHTGEKPFKCKLCSKCFTKSSNLKIHVRTHTDEKPFKCKICSKCFKHSSHLKRHIRTHTGEKPFKCKICSKCFTQSGHLKTHIKTHKLTKSFLNIKFDQNIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057010; iTF_00057059; iTF_00057156; iTF_00057573; iTF_00057459; iTF_00057398; iTF_00056913; iTF_00057502; iTF_00056888;
- 90% Identity
- iTF_00057010;
- 80% Identity
- iTF_00057010;