Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00002024:19213-24036[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.031 2.4 8.3 0.2 22 45 188 211 183 218 0.84

2 7 0.056 4.4 7.5 0.2 21 45 215 239 211 246 0.86

3 7 0.21 17 5.6 0.1 21 44 243 266 239 270 0.90

4 7 0.002 0.16 12.1 0.1 21 45 271 295 267 302 0.86

5 7 0.84 67 3.7 0.1 21 47 299 325 295 330 0.84

6 7 0.26 21 5.3 0.0 21 44 327 350 319 354 0.91

7 7 0.027 2.2 8.5 0.0 21 51 355 385 351 387 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.031	2.4	8.3	0.2	22	45	188	211	183	218	0.84
2	7	0.056	4.4	7.5	0.2	21	45	215	239	211	246	0.86
3	7	0.21	17	5.6	0.1	21	44	243	266	239	270	0.90
4	7	0.002	0.16	12.1	0.1	21	45	271	295	267	302	0.86
5	7	0.84	67	3.7	0.1	21	47	299	325	295	330	0.84
6	7	0.26	21	5.3	0.0	21	44	327	350	319	354	0.91
7	7	0.027	2.2	8.5	0.0	21	51	355	385	351	387	0.85

Sequence Information

Coding Sequence: ATGTTTAAAAAAGAACCGAAATTCGAATACGAAAGTTTTCAACAATTCGTAACAATGGATGATTCTTCAATAAAATCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATCAAGAGATCAATATTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCCAGATTTTGGTGAACAATTAAATTTAGATCGAAGCATCAAAAGATGTTCAAGGAAAAACAATACAAGTTGTCAAAAGCGTTTTTTATCAGCGGCAAAAAAATGGCAACTTCACTTTAGAAAATTCTATGGAACATGCTCATCTTGTGGAAAATTGTTCTATGATAAATTGCTATTTTTAAATCATTTTTATATTTACCACTTTTCCGTTAATTCGAAAAAATCTGTTGACTTAAAAAGGAATAATTCTGGCAAGAAGCATATTAACCGACAAGATCTTAGTAATGTAAACAAACAGATAAGGGCGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAATGTTTTAATTGTAAGATTTGTTCAAAATGTTTCACACAATCCAATAATTTAAAAAGTCATGTTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAACATCCTGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAACACACACTGACGAGAAACCTTTTATATGTAAAATATGTTCGAAATGTTTCAGAGATTCCAGTAACTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTTGAAATGTTTCAAACATTTCAGTACCTTAAAAACTCATATTAGAATTCACACTGACGAGAAACCATTTAAATGTAAGTTTTGTTCAAAATGTTTCACAAAATCGAGTAATTTAAATAAGCATATTGGAACTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCATAGATTCCAGTAACTTAAAAACTCATATCAAAACTCACACTGCTGAAAAACCTTTTAAATGTTAA
Protein Sequence: MFKKEPKFEYESFQQFVTMDDSSIKSVTIKSENDISSQTNQEINIEFDIKKEELHSVCDLPDFKMEFPDFGEQLNLDRSIKRCSRKNNTSCQKRFLSAAKKWQLHFRKFYGTCSSCGKLFYDKLLFLNHFYIYHFSVNSKKSVDLKRNNSGKKHINRQDLSNVNKQIRADSFTQQSDLKKYIKTHNGEKCFNCKICSKCFTQSNNLKSHVRTHTGEKPFKCKICSKCFTTSCNLKSHIRTHTDEKPFKCKICSKCFKHSSTLKTHIRTHTDEKPFICKICSKCFRDSSNLKSHIRTHTDEKPFKCEICLKCFKHFSTLKTHIRIHTDEKPFKCKFCSKCFTKSSNLNKHIGTHTGEKPFKCKICSKCFIDSSNLKTHIKTHTAEKPFKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00057404;
90% Identity: iTF_00057059;
80% Identity: iTF_00057059;