Avir003553.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000152:118232-121450[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.053 4.2 7.5 0.5 22 48 171 197 167 201 0.82 2 8 0.5 39 4.4 0.0 22 45 199 222 196 229 0.86 3 8 0.24 19 5.5 0.1 21 45 226 250 218 257 0.84 4 8 0.1 8.3 6.6 0.2 21 45 254 278 250 285 0.90 5 8 0.15 12 6.1 0.1 21 51 310 340 302 343 0.85 6 8 0.06 4.7 7.4 0.1 21 45 366 390 359 397 0.88 7 8 0.0015 0.12 12.5 0.1 21 52 398 429 394 431 0.88 8 8 0.043 3.4 7.8 0.4 21 46 454 479 450 486 0.86
Sequence Information
- Coding Sequence
- ATGGATGATTCTTCAATAAATTCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATCAAGAGATCAATATTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCCAGATTTTGATGAAGAATTACATTCAGAGCTAAGCATCAAAAGATATTCAAGGAAACAGAATCCAAGTTGTAAAAAGCGTTTTCTATTAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTCTTCTATGATAAATTGTTATTTTTAAACCATTTTTATATTTACCACTTTTTCGCTAATTCGAAAAAATCTGTTAACTTAAGAAGGAATAATTCTGGCATAAAACATAGTAACCGACAAAAAAATCTTAGTAATGTAAACAAACAGATAAGGACGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCCTGTAATTTAAAAAGTCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCATAAATTCCAGTAACTTAAAAAGTCATGTTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCAAACATTCTATTAGTTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAACGTTTCAAATATTCCTGTAACTTAAAAACTCATATTAGAACTCATACTGACGAGAAACGTTTTAAATGTAAGATTTGTTCGAAAGGTTTCACACGACTCAGTGTCTTAAAAACTCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATCTGTTCAAAATGTTTCACACGATCCAGTAGTTTAAAAACTCATATTAGAATTCACACTGACGAGAAACCATTTAAATGTAAGTTTTGTTCAAAATATTTCACAGTTTCCAGTAATTTAATAGTTCATAATAGAACTCACACTGATGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCATAAATTCCAGTAACTTAAAAACTCATATTAAAACTCATATTAAAACTCACACTGCTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTGGATTAAAAAGACATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAGAGTTTCACATACATACATGTTTTAAAACAACATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTCCAAAATGTTTCACACAATCCAGTATATTAAATAGGCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTTAA
- Protein Sequence
- MDDSSINSVTIKSENDISSQTNQEINIEFDIKKEELHSVCDLPDFKMEFPDFDEELHSELSIKRYSRKQNPSCKKRFLLAAKKWQPHFGKFYGTCSSCGKFFYDKLLFLNHFYIYHFFANSKKSVNLRRNNSGIKHSNRQKNLSNVNKQIRTDSFTQQSDLKKYIKTHNGEKRFKCKICSKCFTQSCNLKSHIRIHTDEKPFKCKLCSKCFINSSNLKSHVRTHTDEKPFKCEICSKCFKHSISLKTHIRTHTDEKPFKCKICSKRFKYSCNLKTHIRTHTDEKRFKCKICSKGFTRLSVLKTHIRTHTGEKPFKCKICSKCFTRSSSLKTHIRIHTDEKPFKCKFCSKYFTVSSNLIVHNRTHTDEKPFKCKICSKCFINSSNLKTHIKTHIKTHTAEKPFKCKICSKCFTQSSGLKRHIRIHTGEKPFKCKICSKSFTYIHVLKQHIRIHTGEKPFKCEICPKCFTQSSILNRHIRTHTDEKPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057404;
- 90% Identity
- iTF_00056888;
- 80% Identity
- iTF_00056888;