Avir008113.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000296:424596-427022[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.2 95 3.2 0.2 26 44 192 210 183 214 0.88 2 5 0.045 3.5 7.8 0.2 21 45 215 239 210 246 0.86 3 5 0.085 6.7 6.9 0.1 21 45 243 267 239 274 0.86 4 5 0.0017 0.13 12.3 0.1 21 45 271 295 267 302 0.86 5 5 0.67 53 4.0 0.1 21 48 299 326 295 331 0.84
Sequence Information
- Coding Sequence
- ATGTTTAAAAAAGAACCGAAAATCGAATACGAAAGTTTTCAACAATTCGTAACAATGGAGGAATCTTCAATAAATTCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATCAAGAGATCAATATTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCCAGATTTTGATGAAAAATTAAATTTAGAGCGAAGCATCAAAAGATCTTCAAGGAAAGACAATACAAGTTGTCAAAAGCGTTTCCAATCAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGCTCTTCTTGTGGAAAATTGTTCTATGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTCCGTTAATTCAAAAAAATCTGTTAACTTTAAAAGGAATAATTCTGGTACAAAGCATATTAACCGACAAGATCTTAGTAATGTAAACAAACAGATAAGCGCGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACACAAACTGGCAAAAAACGTTTTAATTGTAAGATTTGTTCAAAATGTTTCACACAACCCAATAATTTAAAAAGTCATGTTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAACATCCTGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTTGAAATGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAACACACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCAGAGATTCCAGTAACTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTTGAAATGTTTCAAACATTTCAGTACCTTAAAAACTCATATTAGAATTCACACTGACGAGAAACCATTTAAAGTAGTTCACTCGCGAAAGGGCTTTTCTTAG
- Protein Sequence
- MFKKEPKIEYESFQQFVTMEESSINSVTIKSENDISSQTNQEINIEFDIKKEELHSVCDLPDFKMEFPDFDEKLNLERSIKRSSRKDNTSCQKRFQSAAKKWQPHFGKFYGTCSSCGKLFYDKLLFLNHFYIYHFSVNSKKSVNFKRNNSGTKHINRQDLSNVNKQISADSFTQQSDLKKYIKTQTGKKRFNCKICSKCFTQPNNLKSHVRTHTGEKPFKCKICSKCFTTSCNLKSHIRTHTDEKPFKCEICLKCFKHSSTLKTHIRTHTDEKPFKCKICSKCFRDSSNLKSHIRTHTDEKPFKCEICLKCFKHFSTLKTHIRIHTDEKPFKVVHSRKGFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057404;
- 90% Identity
- iTF_00057059;
- 80% Identity
- iTF_00057156;