Avir009085.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000338:345861-353314[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.9 71 3.6 0.2 22 44 124 146 119 150 0.86 2 10 0.055 4.4 7.5 0.1 21 44 151 174 147 178 0.90 3 10 0.017 1.3 9.1 0.1 21 46 179 204 175 210 0.86 4 10 0.29 23 5.2 0.0 21 46 207 232 203 235 0.90 5 10 0.45 35 4.6 0.1 22 45 236 259 233 266 0.86 6 10 0.11 8.9 6.5 0.2 21 44 263 286 259 290 0.90 7 10 0.0091 0.72 10.0 0.2 12 52 281 322 280 322 0.84 8 10 0.0049 0.39 10.9 0.1 21 44 319 342 315 346 0.91 9 10 0.014 1.1 9.4 0.3 22 48 348 374 345 378 0.83 10 10 0.0054 0.42 10.7 0.1 21 44 375 398 371 404 0.90
Sequence Information
- Coding Sequence
- ATGGAATTTCCAGATTTTCATGAAGAATTAAATTTAGAGCGAAGCATCAAAAGATATTCGAGGAAACAGGATCCAAATTATAAAAAACGTTTCCTATTTGCGGCAACAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAGCCATTTTTATATTTACCACCTTTTCGTTAATTTGAAAAAATCTGTTAACTTAAAAAGGAATAATTCTGGCACAAAGCATATTAACCGACAAGATCTTAGTAATGTAAACAAACAGATAAGGGCGGATAGTTTCACACAACAGAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAGCGTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACATTCCAATGATTTAAATAGGCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTTCCTTAAAAACTCATATTCGAACTCATACTGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCTGTAATTTAAAAAGTCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACGATCCGGTGATTTAAAATCTCATATTAAAATTCACACTGACGAGAACCCTTTTAAATGTAAAATTTGTTCAAAATGTTACACACGATCCAGTGACTTAAAAAATCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTACCTTAAAACCTCATATTAGAACTCATACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCAAACGTTCCAGTTACTTAAAAACTCATATTAGAATTCACACTAATGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCAGTAACTTAAAATCTCATATTACAACTCACACTGGCGAAAAATCTTTTAACTGTAAGATTTGTTCGAAATGTTTCAGAAATTCCAGTACCTTAAAACGACATATTAGAATTCACTCTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCAGAGATTCCAGTAACTTAAAATTTCATATTACAACTCACACTGGCAAAAACCTTTTAAATGTTTCACACAATCTGTTCATTTAA
- Protein Sequence
- MEFPDFHEELNLERSIKRYSRKQDPNYKKRFLFAATKWQPHFGKFYGTCSSCGKFFYDKLLFLSHFYIYHLFVNLKKSVNLKRNNSGTKHINRQDLSNVNKQIRADSFTQQSDLKKYIKTHNGEKRFKCKICSKCFTHSNDLNRHIRTHTGEKPFKCKICSKCFTQSSSLKTHIRTHTDEKPFKCKLCSKCFTQSCNLKSHIKTHTGEKPFKCKICSKCFTRSGDLKSHIKIHTDENPFKCKICSKCYTRSSDLKNHIRTHTGEKPFKCKICSKCFTQSSTLKPHIRTHTGEKPFKCKICSKCFKRSSYLKTHIRIHTNEKPFKCKICSKCFTQSSNLKSHITTHTGEKSFNCKICSKCFRNSSTLKRHIRIHSGEKPFKCKICSKCFRDSSNLKFHITTHTGKNLLNVSHNLFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057404;
- 90% Identity
- iTF_00056913;
- 80% Identity
- iTF_00056913;