Avir010570.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000042:371635-386581[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3e-11 9.6e-09 34.8 0.0 1 39 337 376 337 380 0.90 2 4 2.1e-12 6.8e-10 38.5 0.1 1 39 391 429 391 432 0.95 3 4 2.8e-18 9e-16 57.3 0.0 1 45 446 491 446 491 0.98 4 4 5.3e-16 1.7e-13 50.0 0.0 1 39 498 537 498 541 0.92
Sequence Information
- Coding Sequence
- ATGTTGCGTCTGGAGGACAGCTTAATATCTCTGGGACTAACAGAGATACAAAATACAGACGAACAATCCGAAAAAAAAGAGGGAAGGATAATGAAATCGAAAACAATCGTATTAAAAAAACGAAGTTATGCGGGGAGTATATTACGAACAGCGGACCAATTAAAGATCAAAGGACTCTGTGAGTCGCCAGACGAGAAAGATTTTCCTGAAACACCCATCGCTATACCCACTTTGAAGAGTGGCAGGAAATCTCCATTACTCAAACATTTCAAGTTTGAAGAAAGTGGTCCTCCAAAATCCAAACAACCAAAACTTACTCGGTCTCAAACCGCAGCCGATTCCCACTCCGCGAATGAAACTAGCGAAGGTGAAGACAAAGACGGCGAAGACGAGACCGGAGGTGAAGAACAATCGAATGAAGAAACAGAAGAAAATGACATGCCAGTAGCTTTGGAAGAGGGTAAACGAAAGAGGCCGCCTCAACAACCCGAACAAGTCAAACCTCTAAACATGAGCAGCCATGGCCTACTATCGGGACAGACAATATTTTCTCAATTCGGCGTGGACACCGATGACTTCCCTCCCGAACCTCCAGCACCTTCTGCGATTCCAGTGGGTCATGTGGATATGTCGACTGCGGCCGTGGATCATTCACCCACCAGAACTATTTTATCGGAACCGATGCATCGCACCGATATTTCCGACTCCACCAAATACATCCTGAACATCAAGAAGGAGGCGGCCGATATTAAATTCGAAACGTTACGTTCATATGATCAAGATAGTCTGTTGGATATGGAGAGTCATTTATCGGGAGCTGATCATTCTATGGATAGTCAGGATGGAAAACCGGGGATACATCATATGATTGGAGATTTTAGTGATATGCCCGGAGTTTCTAGATTAGATTTAAGTAGCGATGACCAAGTACCTGGATTAAAAAATAACGGCCATTCCGATATGACCACATCACGGTCTCATGGTGGTGGTGGTGGACCAAAAACATGGACTCAGGAAGATATGGATATGGCGTTAGATGCCTTAAGAAATCATAATATGAGCCTAACAAAGGCATCAGCAACTTATGGTATTCCCTCCACTACTTTATGGCAAAGAGCACATAGGTTAGGAATAGATACCCCAAAGAAAGAAGGACCTACAAAATCTTGGACTGAAGAGAATCTTAATAATGCCCTAGAAGCTCTTCGAACGGGTACAATTTCTGCCAACAAAGCTAGTAAAGCTTTTGGTATTCCCAGTAGCACCCTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCCCCATTCAATGCAGCTCCGACAACATGGACACCAGAAGACTTAGAAAAAGCATTGGAATCAATACGAACTGGACAAACTTCAGTACAAAAAGCTTCGACTGAATTTGGTATTCCCACAGGAACACTTTATGGTAGGTGTAAGCGAGAAGGTATAGAATTATCACGGTCTAATCCTACACCGTGGTCGGAGGATGCTATGGGAGAAGCACTAGAAGCTGTTAGGTTAGGACATATGTCTATAAACCAAGCAGCTATACATTATAACCTGCCTTACTCATCATTATATGGTCGATTTAAGAGAGGCGTTAAATATGAAGATCCTGATATAGTAGATTTAAATCAGGATAGTCAACTACAAATGGAACATACATTCGGAATGGAATACACTACCTCTTCACCTCAGATTCAATACCAAAATCAAAACAGCTGA
- Protein Sequence
- MLRLEDSLISLGLTEIQNTDEQSEKKEGRIMKSKTIVLKKRSYAGSILRTADQLKIKGLCESPDEKDFPETPIAIPTLKSGRKSPLLKHFKFEESGPPKSKQPKLTRSQTAADSHSANETSEGEDKDGEDETGGEEQSNEETEENDMPVALEEGKRKRPPQQPEQVKPLNMSSHGLLSGQTIFSQFGVDTDDFPPEPPAPSAIPVGHVDMSTAAVDHSPTRTILSEPMHRTDISDSTKYILNIKKEAADIKFETLRSYDQDSLLDMESHLSGADHSMDSQDGKPGIHHMIGDFSDMPGVSRLDLSSDDQVPGLKNNGHSDMTTSRSHGGGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGVKYEDPDIVDLNQDSQLQMEHTFGMEYTTSSPQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00387113; iTF_01047022; iTF_00792010; iTF_00755377; iTF_00327782; iTF_00755904;
- 90% Identity
- -
- 80% Identity
- -