Caur027714.1
Basic Information
- Insect
- Crepidodera aurea
- Gene Symbol
- -
- Assembly
- GCA_949320105.2
- Location
- OX439476.1:22379075-22392576[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-11 2.2e-08 34.8 0.0 1 39 332 371 332 375 0.90 2 4 2.8e-12 1.5e-09 38.5 0.1 1 39 386 424 386 427 0.95 3 4 3.7e-18 2e-15 57.3 0.0 1 45 441 486 441 486 0.98 4 4 5e-16 2.7e-13 50.5 0.0 1 40 493 533 493 535 0.95
Sequence Information
- Coding Sequence
- ATGCATGTTATTGTCTTGCGTCGTGTTCTTGAAGTTCCACTTGACGGGACAGTGCCGCTGTGGGCTGAAATTGAGGGAAAGAATCAAGTAGGTTGGGTGGACTGGCATATAGACTCTCTGTTACGTACAGCGGACCAATTAAAGATCAAAGGATTGTGCGAATCGCCGGACGACAGAGAAAATAGAGAAATCACAGCGGAATTGGCTCTGCAGCTCGAATTTAAAGGTGGCAGGAAGTCGCCTTTGCCCAAATACTCTAAGCCCCAAGATAGCAGTACTCCAAAGGCCAAATACACCAAACTTACTCATCATCCAATCGAAAATAACCCCGCGAATGAAAGTGTCAAAGGCGAAAACAAGGACGGGGCCGAGACTGGAGGTGAAGAACCATCGAATGAAGAAACAGAAGAGAATGACATGCCAGTAGCTTTAGAGGAGCCGACAAGGAAGAGGCCACAACAGCCCGAGCAAACAAAACCGCTAAACATGAGCAGCCATGGCCTACTATCGGGACAGACAATATTCTCCCACTTCGGTGTCGATACAGACGACTTCCCGCCCGAACCGCCGGCCCCTTCGGCAATTCCCGTCGGTCACGTGGACATGTCGACGGCTGCGAGCGATCATTCTCCCACCAGAACGATCCTCACCGGCCCCATGCACCGTACGGACATCTCCGATTCCACGAAGTACACTCTCGATATCAAGAAAGAAGCGGACATCAAGTTCGAAACGTTGCGTTCGTACGATCAAGACAGTCTGCTCGATATGGAGAGTCACTTATCGGGTCCCGACCATTCCATGGATAGCCAGGACGATGAGAGAGGAATGCACCAGATGATGGGGCATGCGGATTTTAGCGGGATGCCTGGAGTTTCTAATAGATTAGATGTAAATAGTAGCGACGACCACGTACCTGGATTGAAAAATAACGGCCATACCGATAACATAACACCATCACGAAGCCATGGTGGTGGTGGACCAAAAACTTGGACTCAGGAAGATATGGATATGGCGTTAGATGCCTTAAGAAATCACAATATGAGCCTAACAAAGGCCTCAGCAACTTATGGTATTCCCTCCACTACATTATGGCAAAGAGCACATAGGCTAGGAATAGATACCCCAAAAAAAGAAGGACCTACCAAATCTTGGACTGAAGAAAACCTAAATAATGCCCTAGAGGCTTTACGGACGGGAACGATATCTGCTAACAAAGCTAGCAAAGCATTCGgtATTCCCAGTAGCACTTTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCTCCCTTCAATGCGGCCCCTACCACGTGGACGCCAGAAGATTTAGAAAAAGCTCTGGAGTCCATACGAACCGGCCAAACTTCAGTACAAAAAGCTTCAACCGAATTCGGCATACCGACAGGAACGTTATACGGACGATGTAAAAGGGAAGGTATCGAGTTGTCAAGGTCAAACCCCACTCCTTGGTCAGAAGATGCCATGGGAGAAGCACTTGAAGCTGTTAGGTTAGGACACATGTCGATCAACCAAGCGGCCATCCACTACAACCTGCCTTACTCGTCGTTGTACGGTCGCTTTAAGCGAGGCATCAAGTTCGATCCTGATCAAGTGGACCTAAATCAGGACAGCCAGTTGCAGATGGATCACACGTTCGGCATGGAATACACTACCTCTCCATCTCAGATCCAATACCAAAATCAAAATAGCTGA
- Protein Sequence
- MHVIVLRRVLEVPLDGTVPLWAEIEGKNQVGWVDWHIDSLLRTADQLKIKGLCESPDDRENREITAELALQLEFKGGRKSPLPKYSKPQDSSTPKAKYTKLTHHPIENNPANESVKGENKDGAETGGEEPSNEETEENDMPVALEEPTRKRPQQPEQTKPLNMSSHGLLSGQTIFSHFGVDTDDFPPEPPAPSAIPVGHVDMSTAASDHSPTRTILTGPMHRTDISDSTKYTLDIKKEADIKFETLRSYDQDSLLDMESHLSGPDHSMDSQDDERGMHQMMGHADFSGMPGVSNRLDVNSSDDHVPGLKNNGHTDNITPSRSHGGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKFDPDQVDLNQDSQLQMDHTFGMEYTTSPSQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056463;
- 90% Identity
- iTF_01047022;
- 80% Identity
- -