Basic Information

Insect: Hermaeophaga mercurialis
Gene Symbol: -
Assembly: GCA_951812935.1
Location: OX638358.1:50658713-50661839[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.8e-11 1.8e-08 34.8 0.0 1 39 328 367 328 371 0.90

2 4 2e-12 1.3e-09 38.5 0.1 1 39 382 420 382 423 0.95

3 4 2.6e-18 1.7e-15 57.3 0.0 1 45 437 482 437 482 0.98

4 4 3.7e-16 2.4e-13 50.4 0.0 1 39 489 528 489 531 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.8e-11	1.8e-08	34.8	0.0	1	39	328	367	328	371	0.90
2	4	2e-12	1.3e-09	38.5	0.1	1	39	382	420	382	423	0.95
3	4	2.6e-18	1.7e-15	57.3	0.0	1	45	437	482	437	482	0.98
4	4	3.7e-16	2.4e-13	50.4	0.0	1	39	489	528	489	531	0.94

Sequence Information

Coding Sequence: ATGGATGGAGGAATAGAAGGAAGAAAAGACCAACGTTGTCGATTGCGCTGCTTTCATACGACATCTCAGAAATTAGAAATTACTCATTATGTACTCTCTCTGCTACGTACAGCGGATCAATTAAAGATCAAAGGATTGTGCGAGTCGCCGGACGAgaaggaaaataaagaaaacccaGAGGAATTGGCTCTGCAACTGCACATTAAAGGTGGAAGGAAATCACCGGTGCCTAAACATTTCaagTATCAGGACAGCAGCGGTCCACCAAAATCGAAACAGCAGAAACTTAACCACACTCTACAAAAAGACCGTCCCGCGAATGAAATTGTTGAAGACGAAAGCAAGGACGGCGAAGAGACAGGAGAAAAAGAACAATCGAATGAAGAAACAGAAGGAAATGACATGCCAGTAGCTTTGGACGAGCCGAAAAGGAAAAGGCCGTCACAACAGCCCGAGCAAACCAAACCGCTAAACATGACCAGTCATGGCCTACTATCTGGACAGacaATATTCTCCCACTTCGGTGTGGACACAGATGACTTCCCACCCGAACCCCCTGCCCCTTCGGCCATTCCTGTGGGTCACGTGGACATGGCAACGAATCCTGCCGATCACTCGCCTACCAGAACAATCCTTACCGGTCCCATGCACCGCACGGATCTCTCGGATTCCACCAAATTCACTCTCGATATCAAGAAGGAGGCCGACATTAAGTTCGAAACGTTGCGGTCATACGACCAAGATAGTCTGCTCGATATGGAGAGCCATCTCTCAGGACCCGACCATTCAATGGATAGTCACGATGACGGGGACCGGGGAATTCATCAGCTGATGGGCCACGGAGACTTCAGCGGGATGCCGGGAGTTTCTAATTCATTAGaTGTAAATAGTAGCGACGACCAAGTACCTGGAATCAAAGATAACGGCCATTCCGATTTAACGCCACGAGGCCATGGCGGTGGTGGTGGACCAAAAACTTGGACTCAAGAAGATATGGATATGGCGTTAGATGCCTTAAGAAATCACAATATGAGCCTAACTAAGGCATCAGCAACTTACGGTATTCCCTCCACTACTTTATGGCAGAGAGCACATAGGCTAGGTATAGATACCCCAAAGAAAGAAGGCCCTACAAAGTCTTGGACTGAAGAAAATCTCAATAATGCCTTAGAAGCACTGAGAACAGGGACAATATCGGCCAACAAAGCTAGCAAAGCCTTTGgtATTCCGAGTAGCACTTTGTACAAAATAGCGAGACGAGAAGGAATAAGACTGGCAGCTCCGTTCAATGCGGCCCCTACGACATGGACGCCGGAAGATTTGGAAAAAGCTCTCGAATCTATACGAACCGGTCAAACTTCAGTACAAAAAGCTTCGACGGAATTCGGAATACCGACGGGAACTTTATACGGAAGATGTAAAAGGGAAGGTATAGAATTGTCGAGATCGAACCCAACGCCTTGGTCGGAAGATGCCATGGGAGAAGCCCTGGAAGCTGTTAgGTTAGGACACATGTCGATCAACCAAGCGGCCATCCATTACAACCTGCCTTACTCGTCATTGTATGGTCGCTTCAAACGAGGCATCAAATATGATCCGGACCAAGTGGACCTAAATACAGACAGCCAGTTGCAGATGGAACACACTTTCGCCATGGAATACACTACCTCTCCATCTCAGATACAATACCATAATCAAAATAGCTGA
Protein Sequence: MDGGIEGRKDQRCRLRCFHTTSQKLEITHYVLSLLRTADQLKIKGLCESPDEKENKENPEELALQLHIKGGRKSPVPKHFKYQDSSGPPKSKQQKLNHTLQKDRPANEIVEDESKDGEETGEKEQSNEETEGNDMPVALDEPKRKRPSQQPEQTKPLNMTSHGLLSGQTIFSHFGVDTDDFPPEPPAPSAIPVGHVDMATNPADHSPTRTILTGPMHRTDLSDSTKFTLDIKKEADIKFETLRSYDQDSLLDMESHLSGPDHSMDSHDDGDRGIHQLMGHGDFSGMPGVSNSLDVNSSDDQVPGIKDNGHSDLTPRGHGGGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDPDQVDLNTDSQLQMEHTFAMEYTTSPSQIQYHNQNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056463;
90% Identity: -
80% Identity: -