Ntra018780.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725341.1:30764458-30782018[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 2.7e-08 34.9 0.0 1 39 313 352 313 356 0.90 2 4 7.8e-12 1.9e-09 38.6 0.1 1 39 367 405 367 408 0.95 3 4 1e-17 2.5e-15 57.4 0.0 1 45 422 467 422 467 0.98 4 4 1.5e-15 3.6e-13 50.5 0.0 1 39 474 513 474 516 0.94
Sequence Information
- Coding Sequence
- ATGCCAGTTATTCGCAAAATATATTCAGAAAAACTGAAACCAAATAGGAAAACGTCCCTACTGCGTACAGCGGACCAATTAAAGATCAAAGGATTGTGCGAAACACCGGACGacaaagaaaatagagaaaacacaGCAGAATTGGCTCTACAACTCGATTTTAAAAGTGGCAGGAAATCGCCGTTGCCCAAACACAagcagTCTCAAGACAACGGTCCCTCAAAATCAAAGTATCCCAAACTCAGCCATCCTCCTGAGGACGACCAACCTGCGAATGAAATTGTCGAAGGCAAAAGCAAGGTCGGGGACGAGACAGGAGACGAAGAACCATCGAATGAAGAAACAGAAGAAAATGACATGCCAGTAGCTTTGGACGAGCCGACAAGGAAGAGGCCGCCGCCACAGCCCGAGCAAACAAAACCGCTAAACATGAGCAGTCATGGCCTACTCTCGGGACAGaCAATATTCTCCCACTTCGGCGTCGACACCGATGATTTCCCACCCGAACCTCCGGCGCCTTCGGCAATCCCCGTCGGTCACATGGACATGTCAACGACTGCTGCCGATCACTCCCCTACTAGGACGATCCTCACAGGTCCTATGCACCGCACAGACATCTCCGATTCCACAAAGTACACCTTGGACATCAAAAAAGAGGCAGACATTAAGTTTGAAACATTACGATCGTACGACCAAGATAGTCTGCTCGATATGGAAAGCCATCTCTCGGGGCCCGACCATTCCATGGATAGCCACGAGGATGGCGAAAGGGGCATGCACCAGCTGATGGGGCAGGGTGACTTCGGTGGGATTCCTGGAGTTTCAAATAGATTAGatGTAAATAGTAGCGACGATCAAGTACCTGGAATCAAAAATAATGGCCATTCCGATACAACACCACCACGAGGCCATGGTGGCGGTGGACCAAAAACTTGGACTCAGGAAGACATGGATATGGCGTTAGATGCCTTAAGAAATCACAATATGAGCCTAACAAAGGCGTCAGCAACTTACGGTATTCCCTCCACTACTTTATGGCAAAGAGCACATAGACTAGGAATAGATACCCCAAAAAAAGAAGGACCTACCAAATCTTGGactgaagaaaatttaaacaatgcaCTGGAAGCATTAAGGACGGGTACAATATCTGCCAACAAAGCCAGCAAAGCGTTCGGTATTCCTAGCAGCACATTATACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCCTTCAACGCGGCTCCTACAACGTGGACACCAGAAGATTTGGAAAAGGCACTGGAGTCGATAAGGACGGGCCAAACTTCGGTACAGAAGGCTTCGACCGAATTCGGTATACCAACAGGAACGTTATACGGACGATGCAAAAGGGAAGGTATAGAGTTGTCGAGGTCAAACCCCACTCCTTGGTCTGAAGACGCCATGGGAGAAGCGCTCGAAGCTGTTAGGTTAGGACACATGTCGATCAACCAAGCAGCCATCCATTATAACCTGCCTTACTCATCGCTGTATGGTCGCTTCAAACGAGGCATCAAATACGATCCAGACCAAGTGGACTTAAATCAGGACAGTCAGTTGCAATTGGATCACACTTTCGGCATGGAATACACTACCTCTCCATCTCAAATTCAATACCAAAATCAAAATAGCTGA
- Protein Sequence
- MPVIRKIYSEKLKPNRKTSLLRTADQLKIKGLCETPDDKENRENTAELALQLDFKSGRKSPLPKHKQSQDNGPSKSKYPKLSHPPEDDQPANEIVEGKSKVGDETGDEEPSNEETEENDMPVALDEPTRKRPPPQPEQTKPLNMSSHGLLSGQTIFSHFGVDTDDFPPEPPAPSAIPVGHMDMSTTAADHSPTRTILTGPMHRTDISDSTKYTLDIKKEADIKFETLRSYDQDSLLDMESHLSGPDHSMDSHEDGERGMHQLMGQGDFGGIPGVSNRLDVNSSDDQVPGIKNNGHSDTTPPRGHGGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDPDQVDLNQDSQLQLDHTFGMEYTTSPSQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056463;
- 90% Identity
- iTF_00387113;
- 80% Identity
- -