Came040787.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293416.1:17407069-17426258[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-10 3.8e-08 34.9 0.0 1 39 320 359 320 363 0.90 2 4 4.2e-12 1e-09 39.9 0.1 1 39 374 412 374 415 0.95 3 4 1.5e-17 3.5e-15 57.4 0.0 1 45 429 474 429 474 0.98 4 4 2.1e-15 5.1e-13 50.5 0.0 1 39 481 520 481 523 0.94
Sequence Information
- Coding Sequence
- ATGGAACAACTGGTGATATTTCAGAAGAGTATCTTCTATGAAAACATAGCCGTATCGCCAACCTCTCTGcggtgttccagagaagtgagcAAGATTTCTCTGCTGCGAACGGCGGACCAATTAAAGATCAAAGGCTTGTGTGAATCGCCCGACGACAAAGAATATTCTGAATTACCTCTCCCGCTTGATAGTAGTAGTAGCAAGGGTGAGAAGAAATCACCGACACCGACACAATTCAAGaaacaagACAATAATTCTGCAGCAAAGTACAACAGACCTGATTCGCAACAAGAAATAACTTCTGCCACGAATGAAGCTGAACCCGACGATAAAGAAGACGATCAAGAGGACCAATCGACGGAAAACGAAGAAAATGATATGCCAGTAGCTTTGGATGAACCTAAAAGAAAAAGGCCAAATCCGCCGGAGCAGACGAAACCTCTAAACATGAGCAGCCATGGTCTCCTCTCTGGACAGACAATCTTCTCCCAGTTTGGAGTGGACACCGATGATTTCCCGCCAGAACCCCCCGCTCCTTCGGCCATTCCCGTTGGCCACATGGACATGTCTACCGTTGAACATTCCCCCACACGAACTCTACTTACCACGCCAATCCATCGAATAGACATTTCCGATTCCACCAAATTCACTTTGGACATTAAAAAAGAAGCCGATATCAAGTTCGAAACTTTGCGTTCGTACGACCAGGACAGCTTGCTGGATATGGAGTCCCATCTGTCTGGTCCGGATCATTCGATGGACAGTCACGATGACGGAGATAGAAGCATGCATCAGGGAATGATGGGGCAGGGAGATTTTGGAGAAATGTTACCTGGAGTTTCAAATAGACTAGatgTAAATAGTAGTGAAGACCAAGTACCTGGAAGTAAAAATGGCCATTCTGAAAACATACACACTCCACCACGATCGCACACTGGTGGTGGACCAAAAACGTGGACTCAGGAAGATATGGACATGGCTTTAGATGCCTTAAGAAATCACAATATGAGCCTTACTAAGGCGTCTGCGACTTATGGTATTCCCTCCACAACTTTATGGCAAAGGGCGCATAGATTAGGAATAGATACTCCAAAGAAAGAAGGACCTACAAAATCCTGGACAGAAGAAAATCTCAACAACGCACTTGAAGCCTTGCGTACTGGTACAATTTCAGCTAATAAGGCTAGTAAAGCATACGGTATTCCTAGTAGCACATTGTATAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCATTCAATGCAGCACCAACGACGTGGACACCCGAAGATTTAGAAAAAGCTTTAGAATCTATCAGAACCGGCCAAACCTCAGTACAAAAAGCCTCTACGGAATTTGGAATACCTACAGGAACCCTATACGGGAGATGTAAGAGGGAAGGAATTGAATTATCCAGGTCGAATCCAACGCCCTGGTCTGAGGACGCCATGGGCGAAGCACTGGAAGCTGTTAGGTTAGGGCACATGTCAATCAATCAAGCAGCTATTCACTACAACCTGCCTTATTCTTCTCTTTACGGACGATTCAAACGTGGAATCAAATACGATCCCGACAATGTTGATTTGAACCAAGACAGCCAGTTACAGATGGATCATTCATTTGGAATGGAATATGCTACCTCTCCTTCTCAAATCCAATATCAAAATCAGAACAGCTGA
- Protein Sequence
- MEQLVIFQKSIFYENIAVSPTSLRCSREVSKISLLRTADQLKIKGLCESPDDKEYSELPLPLDSSSSKGEKKSPTPTQFKKQDNNSAAKYNRPDSQQEITSATNEAEPDDKEDDQEDQSTENEENDMPVALDEPKRKRPNPPEQTKPLNMSSHGLLSGQTIFSQFGVDTDDFPPEPPAPSAIPVGHMDMSTVEHSPTRTLLTTPIHRIDISDSTKFTLDIKKEADIKFETLRSYDQDSLLDMESHLSGPDHSMDSHDDGDRSMHQGMMGQGDFGEMLPGVSNRLDVNSSEDQVPGSKNGHSENIHTPPRSHTGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDPDNVDLNQDSQLQMDHSFGMEYATSPSQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056463;
- 90% Identity
- -
- 80% Identity
- -