Alyc023195.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrochola lychnidis
Gene Symbol
-
Assembly
GCA_963680765.1
Location
OY796861.1:2198110-2206466[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.2e-08 2.3e-05 25.4 0.0 2 40 68 107 67 109 0.93

Sequence Information

Coding Sequence
ATGTCGCGATCATCCCGTAGCCGCGGAAGGTCCGAGTCGGAGTCGAGTTACACTCCTCCAAGAAAAGTACGACGCAAGAGATCCAGAACACCGGAACTAGGCTCTATTCCTCGTTTCGATCCCAGCAAGGAGGGAAGGATGAATAAAAacacaagaaaaaaaagaagaatattaGGATCGAGAGCATACAGAAATTATTCAGAGGAAATGTTAGAATTAGCGGTTGACATGGTAGAAAATAATAGGATGTCAAGTCGGGAGGCAGAAAAGAGGTTCGGGATCCCTCGACGAACGATATTgaacaaagttaaaaaaattcacTTGAAACCAGCTGGAGGACAAAAGAAACTCACTGACGAAGAGGAAGAAAAACTGGTAAACGTGTTGTTAGCTTCAGCAGATTACGGCAGCCCCATGACGAAAATGGATGTAAAAATGTTAGTCTATAAATATGTCGAAAAAAATTCACGGACTGATTTGTTCGATGGCAAATTACCCAGTGATACATGGGTGGAAGGATTTTTAAACAGACATCATTCGAAATTGACCATCAGAACgactcaaaatataaaaaaggtacGGGCTGAGAAAGGATTAGAAGAAATGGAGCAATTTTATGCAAATTTAAGTGAAACGCTAAATGACGTACCACCGATGAACATACTGAACTACGACGAGACTAACTTGTCCGACAATCCAGGCACttcaaaatgtgtttttagaaggGGCGTCAAACATCCTGAAAGGATTCTAAATAACACCAAGAGTTGCATTTCAATCATGTTCACTGCAAGCGCAGCTGGGACATGTCTACCAACATATGTGGTTTATAAATCCTCAAATTTATATTCCGAATGGCTTGAAGGAGGCCCAGCTGGGACTAGATATAATTGTTCCAAATCAGGTTGGTTTGATACGGCTTCATTCGAAGATTACTTTAAAACTATAGTGGTTGAGTGGGCGAAACAAATTCCCGGGCCAAAAGTAGTAATTGGTGATAATTTGTCTTCCCACATAAATATTGAAGTTGTAGAGTTGTGTCGAAAACACAATATAAGGTTGGTATTTTTACCACCAAACTCCACTCACCTAACACAACCACTAGACGTAGCGTACTTTGGGCCACTAAAAAGGGAGTGGAAAAAGATCCTATtggattataaattaaaaaatccaggaCAAACaaccttaaataaaaaacattttccaaAACTTTTGGCTCAACTgctacaaaacataaaaaataaagaaaccaATAATATAATTAGTGGCTTCAGAGCCACTGGCATATGGCCTGTAAATCCACGAAATGTTTTTAAGAGAATCCCTGAGTATTTCGACGATTTAGAATATGGAATTGATAAGACTTTATTGGATTATCTCAAAGAATCAAGGGCTCCTAAGCCAATGCAAGTGAAAAGAAGTAAGAAATTACGCACTGAACCCGGAAAGTCAGTATGTGCTGACGATATCTTGACAATAAATAGTCAACTAACAGCACGAAAAAAACCATCGGTAAGAAAAAATACTGCGGAGGAAAAAATAAAGACTAACCAAGAAAGAGAGACAGAAGAGATTATTGCGTCATGGGACACAGAAAATGAGATATACTACTTGGATGAAATTACAGGTGAAGTAATAGGAAGGGAGGAAACGATTGAATACGATATGCCGTCGACCTCATCTGGAATGGTCGGTTGCGGAAAACCAGTACTACGGCCCCAATTTTTACCGGTGATCTATAATCCAGCCAGACTGGACGCACTTAGTATCAAAATTATCAACATGCATTTAGCTTCACCAGCGAACGATACTAACGCTCAATTACCCGACGTTtgtgtattaaataaaaaaatgaaatgtaaCAGCCAGAATTGGCCTTTTGTAGCTGATGATGAAAATGATACTCCAAGGTGTTTACGATCCACCACGAATAGTTCATCTAAATCTAAAGTTATAATAACCTCAGATGTTATAGTAACCCCTAAGGAAATGAAGGACATCAAGAAACAAATTAAAGTAGGTACTGAAGTCATCGGAAAATCAGCTTTACAGATGAAAATAGTTACGAAGAAAGTGGACAATGAAAATGGAAATGCGTtatacgaaaaaaataaaagaaaacggGAAAATGTAACTACGGGAAAAAAAACAAAGGTTGCGAAACGGAAGAAATTGAGATCTTATTATAGTGAAACGAGCTCTGAATCGGATATTCAGAGTATTGCAAACACAGATGATTCTGAATATGACACATTTGATGAATATCTATCAACATGTTTACAAGATTATATAGATATAGACAATAAGGAAAACTGTGAGCCAGAAAACATCACTGCATCATTTGGGTTAAGTAACATCAGCTATTTTACAAGCGATGTAGATTTAAAAGAAGAGGACTTCGTTGTCGTAAAATTTACGACAAAAAAGAGCATAAAGCACTTTGTCGGTCGTGttctaaatattaaaaacagtaTTCCTATTGTAAAATTTACacgaaaagtaaaaaatactaaagATGGCAAAGTAATTTTTACGTACCCAACCGTGGAGGACGTGTGCGAAGTAAATCGGGACGATGTGGAAGTAATATTACCTCCACCAAACATTTCTAGACGAGGCCaaataatgtttaattttaactttaattcTTCCTACAACATACAATAA
Protein Sequence
MSRSSRSRGRSESESSYTPPRKVRRKRSRTPELGSIPRFDPSKEGRMNKNTRKKRRILGSRAYRNYSEEMLELAVDMVENNRMSSREAEKRFGIPRRTILNKVKKIHLKPAGGQKKLTDEEEEKLVNVLLASADYGSPMTKMDVKMLVYKYVEKNSRTDLFDGKLPSDTWVEGFLNRHHSKLTIRTTQNIKKVRAEKGLEEMEQFYANLSETLNDVPPMNILNYDETNLSDNPGTSKCVFRRGVKHPERILNNTKSCISIMFTASAAGTCLPTYVVYKSSNLYSEWLEGGPAGTRYNCSKSGWFDTASFEDYFKTIVVEWAKQIPGPKVVIGDNLSSHINIEVVELCRKHNIRLVFLPPNSTHLTQPLDVAYFGPLKREWKKILLDYKLKNPGQTTLNKKHFPKLLAQLLQNIKNKETNNIISGFRATGIWPVNPRNVFKRIPEYFDDLEYGIDKTLLDYLKESRAPKPMQVKRSKKLRTEPGKSVCADDILTINSQLTARKKPSVRKNTAEEKIKTNQERETEEIIASWDTENEIYYLDEITGEVIGREETIEYDMPSTSSGMVGCGKPVLRPQFLPVIYNPARLDALSIKIINMHLASPANDTNAQLPDVCVLNKKMKCNSQNWPFVADDENDTPRCLRSTTNSSSKSKVIITSDVIVTPKEMKDIKKQIKVGTEVIGKSALQMKIVTKKVDNENGNALYEKNKRKRENVTTGKKTKVAKRKKLRSYYSETSSESDIQSIANTDDSEYDTFDEYLSTCLQDYIDIDNKENCEPENITASFGLSNISYFTSDVDLKEEDFVVVKFTTKKSIKHFVGRVLNIKNSIPIVKFTRKVKNTKDGKVIFTYPTVEDVCEVNRDDVEVILPPPNISRRGQIMFNFNFNSSYNIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00358501; iTF_00358487; iTF_01221468; iTF_01312169; iTF_01312170; iTF_00147345; iTF_00147388; iTF_00147357; iTF_00147389; iTF_00147358; iTF_00147359; iTF_00147360;
90% Identity
-
80% Identity
-