Sric019294.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000019:4945391-4947907[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-09 2.8e-06 27.1 0.0 5 40 21 57 17 59 0.92
Sequence Information
- Coding Sequence
- atgtggaaaaaaagaagaatattagggtctagagcatacagaaattattcagagaaaatgttagagttagcagtggacatggtggaaaataagaagatgtcaagtcgggaggcagaaaaaagttttgggatccctcgacggacgatattaaacaaagtaaaaaaaaatcacttgaaaccagctggaagaaaaaaaaaactcagtgacgaagaggaacaaaaactggcaaatgtactattagcttcagcagattacggcagccccatgacgaaaatggatgtaaaaatattgatctataaatatgtagaaaaaaattcgcgaactgatttgttcgatggcaaattaccaagcgatacgtgggtggaagcatttttaaacagacatcgttcgaaattaactatcagaacgacagaaaatataaaaaaggtacgggctgagaaaggactagatgaaattgagaagttttatactaatttaagtgaaacactaaaagaagtaccaccgatgaatatattaaattacgatgaaaccaattcgtctgacaatccaggcacttcaaaatgtgtttttagaaggggtgtcaaacatcctgaaaggatcataaatagcacaaaaagttccatttctatcatgtgcactgcaagcgcagctggaacatgtttaccaacatatgtggtttataaatcctcaaatttatattctgagtggcttgaaggaggcccagctgaaaccagatacaattgctccaaatccggatggtttgatacggcttcattcgaagattattttaaaactattgtggttgagtgggcaaaacaaattcctggcccaaaagtcgtcatttgtgataatttgtcttcacacataaatattgaagttgtagagttgtgtcaaaaacacaatataaggttggtatttttaccaccaaattccactcacctaacacaaccgctggacgtagcgtactttggcccactaaaaagagaatggagaaagatcttattggattataaattaaaaaatccaggacagaccaccctgaacaaaaaacactttccaaaacttttggctcagttactagaaaatatgaaacataaggaaagtaacaacataataagtggctttagagctacaggaatatggcctgtaaattcacgaaatatttttaagagaattcctgagtatttcgatcattcagaatatgaaattgatacgactttattaggttatctgaaagaatcaagggctgctaagccaatgcaaataaaaagaagtaaaaaattacgtacagaacccggcaagtcagtatgtgttgacgatatctcgacagtaaatattcaattaataacacaaagtaagacgtatgtaaaaaaaaatgcaaagaagagaacaataaaaactaaacaagaagcaaaccaagaacgagagacagaagagatcatagtgccgtggaacacagaaaatgagatgtacttagatgaaattacaggtcaagtaataggaagagaggaatctccatcgaactcatctgaaatcattggaaaaccaacactacggccccaattttcaccggtgatgtataatccagccagactggttgaacttagtatcgaaattatcaatatgcatttaggatcaccagcttacgatactaacgctcaactacccgacgtctgtgtattcaataaaaaaattagaagtgactgtcagaatcagccttttgttacttataatgaaaatgatactccagagtttttaagatcaatgacaaatagttcatctaattctaaagtcataataacctcagatattaaagtaaaccctaagaaaatgaaggacattaagaaaaacattaaattaactaaagtcatcggaaaatcagctttacagatgaaaatcggtacgaatcaagtggtatatgaaaatgcgttacataaaaataagaaaaaactggaaaatctaacaactggaagaaaaagaagggctgtaaaacggaagaaattgacatattcttatgaaacgagctctgaatcggatgttctgagtattgcaaatacagatgattctgaatatgatgcatttgatgaatatctaacaacatatttacaagagatagataacaaggaaaactgtgagacagaaaatttcaatgcaacatttggattaagtgatatcagctattttaaaagtgatgtagatttaaaagaagaagactgggttgtagtgaaatttgcgacaaaaaaaagcataaagcactttgttggtcgtgtattatctatgaaaaacaatattcctactgtaaaatttgcaagaaaagttaagaatgtaaaagatggtaaagtgattttcacgtatccgaacgtgacgtgtgcgaagtga
- Protein Sequence
- MWKKRRILGSRAYRNYSEKMLELAVDMVENKKMSSREAEKSFGIPRRTILNKVKKNHLKPAGRKKKLSDEEEQKLANVLLASADYGSPMTKMDVKILIYKYVEKNSRTDLFDGKLPSDTWVEAFLNRHRSKLTIRTTENIKKVRAEKGLDEIEKFYTNLSETLKEVPPMNILNYDETNSSDNPGTSKCVFRRGVKHPERIINSTKSSISIMCTASAAGTCLPTYVVYKSSNLYSEWLEGGPAETRYNCSKSGWFDTASFEDYFKTIVVEWAKQIPGPKVVICDNLSSHINIEVVELCQKHNIRLVFLPPNSTHLTQPLDVAYFGPLKREWRKILLDYKLKNPGQTTLNKKHFPKLLAQLLENMKHKESNNIISGFRATGIWPVNSRNIFKRIPEYFDHSEYEIDTTLLGYLKESRAAKPMQIKRSKKLRTEPGKSVCVDDISTVNIQLITQSKTYVKKNAKKRTIKTKQEANQERETEEIIVPWNTENEMYLDEITGQVIGREESPSNSSEIIGKPTLRPQFSPVMYNPARLVELSIEIINMHLGSPAYDTNAQLPDVCVFNKKIRSDCQNQPFVTYNENDTPEFLRSMTNSSSNSKVIITSDIKVNPKKMKDIKKNIKLTKVIGKSALQMKIGTNQVVYENALHKNKKKLENLTTGRKRRAVKRKKLTYSYETSSESDVLSIANTDDSEYDAFDEYLTTYLQEIDNKENCETENFNATFGLSDISYFKSDVDLKEEDWVVVKFATKKSIKHFVGRVLSMKNNIPTVKFARKVKNVKDGKVIFTYPNVTCAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038699;
- 90% Identity
- iTF_01312170;
- 80% Identity
- -