Ccro023235.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991967.1:6659849-6662002[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-07 6.7e-05 22.9 0.0 6 36 34 64 29 71 0.85
Sequence Information
- Coding Sequence
- ATGTTCTTACTGTTCTGTGGTGCTAAGAAAAAAAATACAAGAAAAAAGAGAACGAAATTAGCTTCGAGACAATACAGAAATTATTCAGATGAAATGGTAGAATTAGCGGTTGACATGGTACAAAATAATAGAATGTCAAGTCGGGAGGCAGAAAAGAGGTTTGGAATCCCTCGACGGACAATATTAAACAAAATAAGAAAAATTCACCTGAAACCAGCTGGAGGACAAAAAAAATTAACTGACGAAGAGGAAGAAAAACTGGCAAACGTGTTGTTAGCTTCAGCAGATTACGGCAGCCCTATGACGAAAATGGATGTAAAAATGTTAGTCTATAAATATGTTGAAAAAAATTCACGAACCGATTTATTTGATGACAAATTACCCAGTGATACGTGGGTAGCAGGATTTCTACACAGAAATCGTTCGAAATTAACCATCAGAACAACTCAAAATATAAAAAAGGTACGGGCTGAGAAAGGATTAGAAGAAATGGAACAATTTTATGCTAATTTAAGTGAAACGCTAAATGATGTACCACCGATGAACATACTGAACTACGACGAGACTAACTTGTCCGACAATCCAGGCACTTCAAAATGTGTTTTTAGTAGGGGCGTCAAACATCCTGAAAGGATACTAAATAGCACAAAGGGTTGTATTTCCATCATGTTTACTGCATGCGCAGCTGGGGCTTATTTACCAACATATGTAGTTTATAAATCCTCAAATTTGTATTCCGAGTGGATTGAAGGAGGCCCAGCTGGAACTAGATATAATTGTTCCAAATCCGGTTGGTTTGATACAGCTTCATTCGAAGATTATTTTAAAACTATAGTAGTTGAGTGGGCAAAACGGATTCCCGGGCCAAAAGTAGTAATTGGTGATAATTTGTCTTCCCATATAAATATTGAAGTTGTAGAGTTATGCCAAAAACACAATATAAGGATGGTATTTTTACCACCAAATTCCACTCACCTAACGCAAACGCTGGACGTAGCGTACTTTGGCCCACTAAAAAGAGAGTGGAAAAAGATTCTGTTGGATTACAAATTCAAAAATCCAGGACAATCTTCCTTAAATAAAAAACACTTTCAAAAACTTTTGGCTCAATTATTAGAAAATATGAAACATAAGGAAAGTAATAACATAATAAGTGGTTTCATAGCCACAGGGATATGGCCCGTAAATCCACGAAATGTTTTTAAGAGAATCCCTGAGTATTTAGACGATTCAGAATATGGAATTGATACAGCTTTGTTGGATTATTTAAAAGAATCAAGGGCTGCTAAGCCCATGCAACTAAAAAGAAGTAAGAAATTACACACAGAACCCGGAAAGTCCGTTTGTGCTGATGATATTTCGACTCAACTGACAGCACGTAAAAAGAAATCTGTAAAAAAAAATACTAAAGAGGCAACAATAAAGACTAACCAAGAAAGAGACATAGAAGATATTATGGCGTGGGACACAGAAAATGAGATTTACTTAAATGAAATTACAGGTGAAGTGACAGAAAAAAAGGGAACGATTGAATACGATATGCCATCAACCTCCTTTGGAATCATCGGTTGCGGAGAACCAGCACTATGGCCCCAATTTTCACCGGTGATCTATAATCCAGCCAGACTTGATGCACTTAGTATCAAAATTATCAACATGCATTTAGGTTTAGCAGCACACTATACTAACGATCAACAAGTTGACGTGTGTGTATTAAATAAATCAATGAAAAGTTGCAGCCAGAATCGGCTTTTTGTTGCTCATGATGCGAATATTTCATCTCAACCTAAAGTTATAATAACCTCAGATGTAAGAGTAACAACAAAAGAAATGATGGACATCAAGAAAAAAATTAGATTAGGTACTGAAACCAGCGGAAAACCAGCCTTACAGATGAAAATTGTTGCAAAGAAAGTTGAAACCAATAAAAGAAAACAGGAAAGTGTAAATACTGGAAGAAAAAAAAAGGTTACGAAACGGAAGAAATTGAGACCATATTATTGTGAAACGAGTTCTGAATCGGATATTCTGAGTATTGCAAACACAGATGATTCTGAATATGAGACATTTGATGAATATCTATCAACATGTTTACAAGAGATAGAAAGAAAATTTCGACCCGGAAAACTCCAATCCACCATTTGGGCTTGGTGA
- Protein Sequence
- MFLLFCGAKKKNTRKKRTKLASRQYRNYSDEMVELAVDMVQNNRMSSREAEKRFGIPRRTILNKIRKIHLKPAGGQKKLTDEEEEKLANVLLASADYGSPMTKMDVKMLVYKYVEKNSRTDLFDDKLPSDTWVAGFLHRNRSKLTIRTTQNIKKVRAEKGLEEMEQFYANLSETLNDVPPMNILNYDETNLSDNPGTSKCVFSRGVKHPERILNSTKGCISIMFTACAAGAYLPTYVVYKSSNLYSEWIEGGPAGTRYNCSKSGWFDTASFEDYFKTIVVEWAKRIPGPKVVIGDNLSSHINIEVVELCQKHNIRMVFLPPNSTHLTQTLDVAYFGPLKREWKKILLDYKFKNPGQSSLNKKHFQKLLAQLLENMKHKESNNIISGFIATGIWPVNPRNVFKRIPEYLDDSEYGIDTALLDYLKESRAAKPMQLKRSKKLHTEPGKSVCADDISTQLTARKKKSVKKNTKEATIKTNQERDIEDIMAWDTENEIYLNEITGEVTEKKGTIEYDMPSTSFGIIGCGEPALWPQFSPVIYNPARLDALSIKIINMHLGLAAHYTNDQQVDVCVLNKSMKSCSQNRLFVAHDANISSQPKVIITSDVRVTTKEMMDIKKKIRLGTETSGKPALQMKIVAKKVETNKRKQESVNTGRKKKVTKRKKLRPYYCETSSESDILSIANTDDSEYETFDEYLSTCLQEIERKFRPGKLQSTIWAW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038699;
- 90% Identity
- iTF_00358487;
- 80% Identity
- -