Ccro012473.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colias croceus
Gene Symbol
-
Assembly
GCA_905220415.1
Location
HG991980.1:6063176-6065662[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.2e-08 1e-05 25.5 0.0 2 36 26 60 25 67 0.88

Sequence Information

Coding Sequence
ATGTATAGTGCTAAGACAAAAAATACAAGAAAAAAGAGAACGAAATTAGCTTCGAGACAATACAGAAATTATTCAGATGAAATGCTAGAATTAGCGGTTGACATGGTACAAAATAATAGAATGTCAAGTCGGGAGGCAGAAAAGAGGTTTGGAATCCCTCGACGGACAATATTAAACAAAATAAGAAAAATTCACCTGAAACCAGCTGGAGGACAAAAAAAATTAACTGACGAAGAGGAAGAAAAACTGGCAAACGTGTTGTTAGCTTCAGCAGATTACGGCAGCCCCATGACGAAAATGGATGTAAAAATGTTAGTCTATAAATATGTTGAAAAAAATTCACGAACCGATTTATTTGATGACAAATTACCCAGTGATACGTGGGTAGCAGGATTTCTACACAGAAATCGTTCGAAATTAACCATCAGAACAACTCAAAATATAAAAAAGGTACGGGCTGAGAAAGGATTAGAAGAAATGGAACAATTTTATGCTAATTTAAGTGAAACGCTAAATGATGTACCACCGATGAACATACTGAACTACGACGAGACTAACTTGTCCGACAATCCAGGCACTTCAAAATGTGTTTTTAGAAGGGGCGTCAAACATCCTGAAAGGATACTAAATAGCACAAAGGGTTGTATTTCCATCATGTTTACTGCATGCGCAGCTGGGGCTTGTTTACCAACATATGTAGTTTATAAATCCTCAAATTTGTATTCCGAGTGGATTGAAGGAGGCCCAGCTGGAACTAGATATAATTGTTCCAAATCCGGTTGGTTTGATACAGCTTCATTCGAAGATTATTTTAAAACTATAGTAGTTGAGTGGGCAAAACGGATTCCCGGGCCAAAAGTAGTAATTGGTGATAATTTGTCTTCCCATATAAATATTGAAGTTGTAGAGTTATGCCAAAAACACAATATAAGGATGGTATTTTTACCACCAAATTCCACTCACCTAACGCAACCGCTGGACGTAGCGTATTTTGGCCCACTAAAAAGAGAGTGGAAAAAGATTCTGTTGGATTACAAATTGAAAAATCCAGGACAATCTTCCTTAAATAAAAAACACTTTCCAAAACTTTTGGCTCAATTATTAGAAAATATGAAACATAAGGAAAGTAATAACATAATAAGTGGTTTCAGAGCCACAGGGATATGGCCCGTAAATCCACGAAATGTTTTTAAGAGAATCCCTGAGTATTTAGACGATTCAGAATATGGAATTGATACAGCTTTGTTGGATTATTTAAAAGAATCAAGGGCTGCTAAGCCCATGCAACTAAAAAGAAGTAAGAAATTACACACAGAACCCGGAAAGTCCGTTTGTGCTGACGATATTTCGACTCAACTGACAGCACGTAAAAATAAATCTGTAAAAAAAAATACTAAAGAGGCAACAATAAAGACTAACCAAGAAAGAGACATAGAAGATATTATGGCGTGGGACACAGAAAATGAGATTTACTTAAATGAAATTACAGGTGAAGTGATAGAAAAAAAGGGAACGATTGAATACGATATGCCATCAACCTCCTTTGGAATCATCGGTTGCGGAGAACCAGCACTATGGCCCCAATTTTCACCGGTGATCTATAATCCAGCCAGACTTGATGCACTTAGTATCAAAATTATCAACATGCATTTAGGTTTAGCAGCACACTATACTAACGATCAACAAGTTGACGTGTGTGTATTAAATAAATCAATGAAAAGTTGCAGCCAGAATCGGCTTTTTGTTGCTCATGATGAGAATGATACTCCTGGATGTTTACGAACAATGACGAATATATTTTCATCTCAACCTAAAGTTATAATAACCTCAGATGTAAGAGTAACACCAAAAGAAATGATGGACATCAAGAAAAAAATTAGATTAGGTACTGAAACCATCGGAAAATCAGCCTTACAGATGAAAATTGTTGCAAAGAAAGTTGAAACCAATAAAAGAAAACAGGAAAGTGTAAATACTGGAAGAAAGGTTACGAAACGGAAGAAATTGAGACCATATTATTGTGAAACGAGTTCTGAATCGGATATTCTGAGTATTGCAAACACAGATGATTCTGAATATGAGACATTTGATGAATATCTATCAACATGTTTACAAGAGATAGAGAAAGAAAATTTCGACCCAGAAAACTCCAATCCACCATTTGGGCTTGGTGATATAAGATACTTTACAAACGATGTGAAATTAAAAGAAGAGGACTGGGTTATAGTCAAATTTGCAACAAAAAAAAGCGTAAAGCACTTTGTTGGTCGTGTACTATATTTAAAAAACAGTATTCCTACAGTAAAATTCACAAGAAAAGTAAAAAATGCAAAAGGTGGTAAGGTAATCTTTTCTTACCCGAACGTGGAGGACGTTTGTGACGTAAATGTAGATGACGTGGAAATTGTATTACCTCCTCCAAATATTTCGAGACGAGGCCAAATAATGTTTGATTTTACATTTAATCCTTCATACAACATTCAGTAA
Protein Sequence
MYSAKTKNTRKKRTKLASRQYRNYSDEMLELAVDMVQNNRMSSREAEKRFGIPRRTILNKIRKIHLKPAGGQKKLTDEEEEKLANVLLASADYGSPMTKMDVKMLVYKYVEKNSRTDLFDDKLPSDTWVAGFLHRNRSKLTIRTTQNIKKVRAEKGLEEMEQFYANLSETLNDVPPMNILNYDETNLSDNPGTSKCVFRRGVKHPERILNSTKGCISIMFTACAAGACLPTYVVYKSSNLYSEWIEGGPAGTRYNCSKSGWFDTASFEDYFKTIVVEWAKRIPGPKVVIGDNLSSHINIEVVELCQKHNIRMVFLPPNSTHLTQPLDVAYFGPLKREWKKILLDYKLKNPGQSSLNKKHFPKLLAQLLENMKHKESNNIISGFRATGIWPVNPRNVFKRIPEYLDDSEYGIDTALLDYLKESRAAKPMQLKRSKKLHTEPGKSVCADDISTQLTARKNKSVKKNTKEATIKTNQERDIEDIMAWDTENEIYLNEITGEVIEKKGTIEYDMPSTSFGIIGCGEPALWPQFSPVIYNPARLDALSIKIINMHLGLAAHYTNDQQVDVCVLNKSMKSCSQNRLFVAHDENDTPGCLRTMTNIFSSQPKVIITSDVRVTPKEMMDIKKKIRLGTETIGKSALQMKIVAKKVETNKRKQESVNTGRKVTKRKKLRPYYCETSSESDILSIANTDDSEYETFDEYLSTCLQEIEKENFDPENSNPPFGLGDIRYFTNDVKLKEEDWVIVKFATKKSVKHFVGRVLYLKNSIPTVKFTRKVKNAKGGKVIFSYPNVEDVCDVNVDDVEIVLPPPNISRRGQIMFDFTFNPSYNIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00038699;
90% Identity
iTF_00358501;
80% Identity
-