Basic Information

Insect: Agapostemon virescens
Gene Symbol: -
Assembly: GCA_028453745.1
Location: CM052089.1:20913000-20915424[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.4e-05 0.0089 17.2 2.0 2 23 282 303 281 303 0.97

2 15 9.1e-05 0.013 16.7 3.2 1 23 309 332 309 332 0.97

3 15 6.1e-06 0.00085 20.4 1.4 2 23 409 430 408 430 0.97

4 15 1.1e-05 0.0015 19.6 1.7 1 23 436 458 436 458 0.96

5 15 0.00018 0.026 15.7 1.6 1 23 464 486 464 486 0.98

6 15 8.8e-07 0.00012 23.0 0.2 1 23 501 523 501 523 0.98

7 15 1.3e-06 0.00018 22.5 0.9 1 23 529 551 529 551 0.97

8 15 7.2e-06 0.001 20.1 2.0 1 23 557 579 557 579 0.98

9 15 0.00077 0.11 13.8 0.3 1 23 585 607 585 607 0.99

10 15 9.1e-06 0.0013 19.8 0.3 1 23 613 636 613 636 0.93

11 15 1.6e-05 0.0022 19.1 1.3 1 23 642 664 642 664 0.98

12 15 0.00034 0.048 14.9 4.7 1 23 670 692 670 692 0.98

13 15 5.2e-06 0.00072 20.6 0.2 1 23 698 721 698 721 0.96

14 15 2e-06 0.00028 21.9 0.9 1 23 727 749 727 749 0.96

15 15 5.9e-07 8.3e-05 23.5 4.9 1 23 755 777 755 777 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.4e-05	0.0089	17.2	2.0	2	23	282	303	281	303	0.97
2	15	9.1e-05	0.013	16.7	3.2	1	23	309	332	309	332	0.97
3	15	6.1e-06	0.00085	20.4	1.4	2	23	409	430	408	430	0.97
4	15	1.1e-05	0.0015	19.6	1.7	1	23	436	458	436	458	0.96
5	15	0.00018	0.026	15.7	1.6	1	23	464	486	464	486	0.98
6	15	8.8e-07	0.00012	23.0	0.2	1	23	501	523	501	523	0.98
7	15	1.3e-06	0.00018	22.5	0.9	1	23	529	551	529	551	0.97
8	15	7.2e-06	0.001	20.1	2.0	1	23	557	579	557	579	0.98
9	15	0.00077	0.11	13.8	0.3	1	23	585	607	585	607	0.99
10	15	9.1e-06	0.0013	19.8	0.3	1	23	613	636	613	636	0.93
11	15	1.6e-05	0.0022	19.1	1.3	1	23	642	664	642	664	0.98
12	15	0.00034	0.048	14.9	4.7	1	23	670	692	670	692	0.98
13	15	5.2e-06	0.00072	20.6	0.2	1	23	698	721	698	721	0.96
14	15	2e-06	0.00028	21.9	0.9	1	23	727	749	727	749	0.96
15	15	5.9e-07	8.3e-05	23.5	4.9	1	23	755	777	755	777	0.99

Sequence Information

Coding Sequence: ATGAATTCGCATTGCGATATTGTAAACAAGAGACTGTATCATCGTGGGCAAGTCGATGTCATAGACATGCCGATCAAACTAACCACCATGTACAAGTACTTCTTCGTTTATGAGGATCAAGTTTCCAAGTTCGTTGTTTTGGAAGGAATACACGAAAATACCGCAAGAGAAGTGGCTATGAAACTTCTAAACATATTAGCACTCATTGGAGCACCACAGGTTATACAAAGTAAAAATGGACGTAAGTTTGCGGAACAGGTTGTGCGGGAATTGCGTTTTTTGTGGAAAGATTATATTATTCTTCATGGAGATATTTCTGAAAGCAACCAGAGCAAGGAGAACAACAGGGATTTTAAGAAATTGCTCGAATGCTGGGCTCGAGCAAACCATGCTGCAACATGGTACGAAGCTCTGAAACAGGTACAAATTTTACAAAATTCCACGTTTCAATGCGAAAATGGAAAGATTCCCTACGACATACTGTTCGGAAGAAACGTGCACGAGGAATTCCAAAAGAGAACTAGCATAATGGATAAGATGGAAGACATATGGACAGAAGAAGAATGGATTAATTTTATATCCGACAAGTCTGCTGTAAGCGAGAAGGAAGAGGCTGGAAAGTACATGGAATGTTCAGACTCCCTAGATATCAAAGACGTGGATAGCTGGAGAGACGACAGCGACTCTGCCAACGAAGTCAGGAACGAACTTTCAAGAGATCCTCTCGATTTTAATTTCGTCAACGTTAAAAGTGAACCTTCAAACATGCATACCGAAGATTCTGTATTCGACGACGTATTGGCCGATGACAAAACAAACTCGGTCCCCGAGAACAAAAATTTGAAATGCAAGATTTGCCAGAAGCAGTACATGAAACTTGGTTACCTAAAGAACCACATGAGGTCGCACATCAAAGGAAAGAAGTTCGAGTGCACCCTGTGCAACAAAACGTTTCATGTTTTGAGCTTATATGAGAAACATATGCGACAATCGCATCGACAAACGGACAGTTTAAACAGAACCAGAAGAAGTAGAGATCGCCCACAGGAAGAAACGATACCAAACATGAAATCGTTCGAATTAAGTAACTCTGCGAATATAGATTCGATTGAAACAAAATCAAAGGCTGCGGATGATGGCCCTAAAGCACCTAAACGCTTGTGCCTCGACAAGGAAAGGAAAAAAGTGTCTTCGGAGAAGGTAAGTAATGGAGAGCCATCTTTGGAATGCACTTACTGCAAGCAGAAATTTAGTTTTCCTAGTGTATTAAAAAGGCACATTCGATCTCACACGAACGAAAGGCCGTACATTTGCGAGATTTGTAACAAGAGTTTCAAACAGTTAGGACATCTTAGTCAGCATTCGTTGTCGCACAAGGACTACCGTTCGTTCCAGTGTTCAGTCTGCGGAATCAAGTTCGGCACTTTCACCGCGTTAAAGGTGCACACGCACACGCACAAGGAGTACTACGTCTCGAAACCAAAAGAGTCTTTCCGGTTATACGAATGCGACAATTGTAAGAAGGTGTTTGCCACTAAAAGCGTGCTAGAACGGCACATACTGATTCACACGCACGAGCGTCAGTTTGCCTGTACCGTTTGCGGGAAACGATTCAAACAAGCAGGCCACGTAAAGTCGCACATGCTGGTTCATACCGGTGAGCGGAAATTCGAATGTACAGTCTGTCAGAAAAGGTTCAGCTTGTCAAACTCGTTAAAGAAGCACATGTACGTGCACAACGGGGACAAGCCGTATCAGTGCGACATGTGTGGCGCCCGGTTCCTCGAGAAGAGGAACTTGAACGGACACCTAATGACTCACACGAATCAGCGTCCGTTCCGCTGTAAGATCTGTGGGAAACGATACACTTTGGCAGACACTTTACGTCGTCACGTAAGTGCCGCTCACGAAGAGGGTCGCACATACCAATGCGAGATCTGTGCAAAAATGTTCAAGCAGCTGGCTCATCTTTCTGTTCACAAGAAAGTACACAACGACGAGCGGCCTTTCCAGTGTCATTTGTGCGAAAAGAACTTTAAGCATAAGAACGTCCTGAAGTCTCATCTGGCCATTCACGCAAACGTTAGGCCGTTCGAATGTGATGTTTGCAAGGCCACCTTCGTGAGAAAGACCAACTTGCAGACGCACATCGCCTCTGCTCATATGAACGAAAGACCATACGTATGCACTATTTGCGGCAAACGGTTTAAACAAACTAGCCATCTGAATGGTCATGTGGTGGTGCACAGTAATCTAATGCCTTATCAGTGTAACTATTGCGACCGACGCTGTAACAGACTCGACAATTTGAAGAAACATATGCGCCTTCACACGAAAAACAAGGAGGGAGTGGCTTAA
Protein Sequence: MNSHCDIVNKRLYHRGQVDVIDMPIKLTTMYKYFFVYEDQVSKFVVLEGIHENTAREVAMKLLNILALIGAPQVIQSKNGRKFAEQVVRELRFLWKDYIILHGDISESNQSKENNRDFKKLLECWARANHAATWYEALKQVQILQNSTFQCENGKIPYDILFGRNVHEEFQKRTSIMDKMEDIWTEEEWINFISDKSAVSEKEEAGKYMECSDSLDIKDVDSWRDDSDSANEVRNELSRDPLDFNFVNVKSEPSNMHTEDSVFDDVLADDKTNSVPENKNLKCKICQKQYMKLGYLKNHMRSHIKGKKFECTLCNKTFHVLSLYEKHMRQSHRQTDSLNRTRRSRDRPQEETIPNMKSFELSNSANIDSIETKSKAADDGPKAPKRLCLDKERKKVSSEKVSNGEPSLECTYCKQKFSFPSVLKRHIRSHTNERPYICEICNKSFKQLGHLSQHSLSHKDYRSFQCSVCGIKFGTFTALKVHTHTHKEYYVSKPKESFRLYECDNCKKVFATKSVLERHILIHTHERQFACTVCGKRFKQAGHVKSHMLVHTGERKFECTVCQKRFSLSNSLKKHMYVHNGDKPYQCDMCGARFLEKRNLNGHLMTHTNQRPFRCKICGKRYTLADTLRRHVSAAHEEGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQTSHLNGHVVVHSNLMPYQCNYCDRRCNRLDNLKKHMRLHTKNKEGVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00864777; iTF_01071137; iTF_00763371; iTF_00762695; iTF_00863408; iTF_00864113; iTF_00862034; iTF_00860563; iTF_00861337; iTF_00865468; iTF_00866838; iTF_00866156;
90% Identity: -
80% Identity: -