Lzep019397.1
Basic Information
- Insect
- Lasioglossum zephyrum
- Gene Symbol
- SCAND3
- Assembly
- GCA_028455615.1
- Location
- CM052327.1:5464190-5466615[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.1e-05 0.0044 17.6 3.4 2 23 279 300 278 300 0.97 2 15 0.0016 0.14 12.9 6.6 1 23 306 329 306 329 0.97 3 15 3.1e-06 0.00027 21.4 1.1 2 23 406 427 405 427 0.97 4 15 5.7e-06 0.00049 20.6 1.8 1 23 433 455 433 455 0.97 5 15 0.0035 0.3 11.8 1.2 1 21 461 481 461 485 0.91 6 15 2.4e-06 0.00021 21.8 0.7 1 23 500 522 500 522 0.97 7 15 1e-06 8.9e-05 22.9 0.8 1 23 528 550 528 550 0.98 8 15 1.2e-05 0.0011 19.5 2.6 1 23 556 578 556 578 0.98 9 15 0.00075 0.065 13.9 0.2 1 23 584 606 584 606 0.99 10 15 3.3e-06 0.00029 21.3 0.3 1 23 612 635 612 635 0.94 11 15 1.7e-05 0.0015 19.1 1.3 1 23 641 663 641 663 0.98 12 15 0.00037 0.032 14.9 4.7 1 23 669 691 669 691 0.98 13 15 3.5e-06 0.0003 21.2 0.4 1 23 697 720 697 720 0.96 14 15 1.8e-05 0.0016 19.0 1.6 1 23 726 748 726 748 0.95 15 15 6.5e-07 5.7e-05 23.5 4.4 1 23 754 776 754 776 0.99
Sequence Information
- Coding Sequence
- ATGAATTCGCATTGTGATATCGTGAACAAGAGACTGTTTCGCCGTGGGCAAATTGATGTCATGGACATGCCAGTCAAATTAACCAGCAGTTACAAGTACTTCTTCGTTTACGAGGATCAAGTATCTAAGTTCGTTGTGCTGAAAGGATTACATGAAAATACTGCAAGCGAAGTGGCTATGAAACTTCTAGATGTATTAGCCATCATCGGAGCACCACAGGTTATACAAAGTAACAACGGGCGTAAGTTCGCAGAACAGGTTGTGCAGGAATTACGTTTTCTATGGAAAGATTTTGTTATTCTTCATGGAGACATTTCCGAGAACAAGGAGAACAACAGAGATTTTAAGAATTTGCTCGAATGCTGGGCTCAGAGAAACCCTACCACAACATGGTACGAAGCTCTGAAGCATGTACAGATTTTACAGAATTCCACCTTTCGATGCGAAAATGGAAAGATTCCGTATGACATACTGTTTGGTAGAAACGTGCACGAGGAATTTCAAAAGAGAACTAGCACAATGAGTAAGAGGGAAGACATATGGACAGAAGAAGAATGGATTAATCTTGTAACCGATATGTCTGCCATTGCCGAGAAAGAAGAGGCTGATAGGTTTATGGAAAGTTCAGATTCTATAGATATTAAAGACATGGATTGCTGGAGGGACGACAGCAATTCCGCCAGCGACATCAGGAACGATCTCACGAAAGAACCTCCCGATTTTAATTTTGTCAATGTTAAAAGCGAACCTTTGAACATGCATACCGAAGATTCTGTATCAGAAGACATACTGGCCGATGATAAAATTAAATCAGTCCCTGAGAACGAAAAATTGAAGTGCAAGATCTGCCAGAAGCAGTATATGAGACTCGGTCACCTGAAGAACCATATGCAGTCGCACACCAAAGGGAAGAAGTTCGAGTGCACCTTGTGCAAAAAGACGTTTCATGTTTGTAGTTTGTACGAGAAACATATGCGACAATCGCATCGACAAGCGCACAGTTTAAACAGGACGAGAAGAAGCAGAGATCGTTCGCAGGAAGAAGAAACGATATTGAACGAGAAATCGTCCGAATTGAATAGTTCTGCGAACGCAGATTCTACTGAAAAGAAATGGACAACTGAGGACGAAGGCCCTAATGCGAAACGTTTGTGCCTACTTAAGGAATGGAAAACACCGTCTACGGAGAATATATTCAACGGAGATTCATCTTTGGAATGCTCTTACTGCAAGCAAACATTTAGTTTCCCTAGCGTATtgaaaaggcacattcggtctcacacgaacgaaaggccgtacatttgcgagatttgtaacaagagtttcaaacagttaggacatcttagtcagcattcgttgacgcacaaggactaccgttcgttccagtgcgcggtctgcggaaccaagttcggcagtttgaccgcgttgaaggtgcacacgcATCAGCGCAAGCACAAAGGAGGCTACGTAACGAAATCGAAGAGGCCCATTcggttgttcgaatgcgacaattgcaagaaggtcttcacgactaaaagcgtgctggagcgacacgtagtgacccattcgcaagagcgtctgtttccctgtagcgtttgcgggaagaaattcaaacaagcgggccacgtgaagtcgcacatgttggttcacaccggtgagcggaagttcgaatgtacagtctgcaagaagaggttcagcctgcggaactcgctgaagaagcatatgtacgtgcacaatggagagaagccgtatcagtgcgacgtgtgcggcgcccggttcctcgagaagaggaacttgaacggacacctgatgactcacacgaacgagcgtccgttccgctgcaagatctgcgggaaacggtacactttggcggacactttgcgtcgtcacataagcgccgctcacgaagacggtcgcacgtaccaatgcgagatctgcgcgaaaatgttcaagcagctagcccatctttccgttcataagaaagtgcacaacgacgagcggccgttccagtgtcatctgtgcgaaaagaactttaagcataagaacgtcctcaagtctcatctggccattcacgcgaacgtcaggccgttcgaatgcgacatctgcaaggccaccttcgtcaggaagaccaacctgcagacgcacatcgcctcctcccacatgaacgagaggccacacgtttgcaccatttgtggcaaaaagttcaagcaaattagccacttgaatggtcacgtggtggtgcatagtaatttaatgccttatcagtgcgattactgcgaccgacgttgcaacagactcgacaatttgaagaaacatatgcgCCTTCATACGAAAAACAAGGAGGTAGTAGCTTAA
- Protein Sequence
- MNSHCDIVNKRLFRRGQIDVMDMPVKLTSSYKYFFVYEDQVSKFVVLKGLHENTASEVAMKLLDVLAIIGAPQVIQSNNGRKFAEQVVQELRFLWKDFVILHGDISENKENNRDFKNLLECWAQRNPTTTWYEALKHVQILQNSTFRCENGKIPYDILFGRNVHEEFQKRTSTMSKREDIWTEEEWINLVTDMSAIAEKEEADRFMESSDSIDIKDMDCWRDDSNSASDIRNDLTKEPPDFNFVNVKSEPLNMHTEDSVSEDILADDKIKSVPENEKLKCKICQKQYMRLGHLKNHMQSHTKGKKFECTLCKKTFHVCSLYEKHMRQSHRQAHSLNRTRRSRDRSQEEETILNEKSSELNSSANADSTEKKWTTEDEGPNAKRLCLLKEWKTPSTENIFNGDSSLECSYCKQTFSFPSVLKRHIRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDYRSFQCAVCGTKFGSLTALKVHTHQRKHKGGYVTKSKRPIRLFECDNCKKVFTTKSVLERHVVTHSQERLFPCSVCGKKFKQAGHVKSHMLVHTGERKFECTVCKKRFSLRNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDICKATFVRKTNLQTHIASSHMNERPHVCTICGKKFKQISHLNGHVVVHSNLMPYQCDYCDRRCNRLDNLKKHMRLHTKNKEVVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00024748;
- 90% Identity
- iTF_00866156; iTF_00863408; iTF_00864113; iTF_00862034; iTF_00860563; iTF_00861337; iTF_00865468; iTF_00864777;
- 80% Identity
- -