Lmal015515.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum malachurum
Gene Symbol
SCAND3
Assembly
GCA_028455605.1
Location
CM052318.1:25465976-25468404[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5.4e-05 0.004 17.6 3.4 2 23 279 300 278 300 0.97
2 15 0.00076 0.056 14.0 6.1 1 23 306 329 306 329 0.97
3 15 3.7e-06 0.00028 21.2 1.8 2 23 407 428 406 428 0.97
4 15 3.3e-06 0.00025 21.4 1.8 1 23 434 456 434 456 0.98
5 15 0.0048 0.36 11.4 0.8 1 21 462 482 462 486 0.91
6 15 9e-07 6.7e-05 23.2 0.9 1 23 501 523 501 523 0.98
7 15 7.4e-05 0.0055 17.1 0.6 1 23 529 551 529 551 0.93
8 15 1.3e-05 0.00095 19.5 2.6 1 23 557 579 557 579 0.98
9 15 0.0008 0.059 13.9 0.2 1 23 585 607 585 607 0.99
10 15 3.5e-06 0.00026 21.3 0.3 1 23 613 636 613 636 0.94
11 15 1.8e-05 0.0013 19.1 1.3 1 23 642 664 642 664 0.98
12 15 0.00039 0.029 14.9 4.7 1 23 670 692 670 692 0.98
13 15 3.7e-06 0.00027 21.2 0.4 1 23 698 721 698 721 0.96
14 15 3.9e-06 0.00029 21.2 0.6 1 23 727 749 727 749 0.96
15 15 6.9e-07 5.1e-05 23.5 4.4 1 23 755 777 755 777 0.99

Sequence Information

Coding Sequence
ATGAATTCGCATTGTGATATTGTGAACAAGAGACTGTTTCGCCGTGGACAAGTTGATGTCATGGACATGCCAGTCAAACTAACCAGCAATTACAAGTACTTCTTCGTTTACGAGGATCAAGTATCTAAGTTCGTTGTGCTGAAAGGATTACACGAAAATACTGCGAGCGAAGTGGCTATGAAACTTCTAGACGTATTAGCCATCATCGGAGCACCACAGGTTATACAAAGTAACAACGGACGCAAGTTCGCAGAACAGGTTGTGCAGGAATTACGTTTTCTATGGAAAGATTTTGTTATTCTTCATGGAGACATTTCCGAGAACAAAGGGAACAACAGAGATTTTAAGAACTTGCTCGAATGCTGGGCTCAGAGAAACCCTACTACAACGTGGTACGAAGCTCTGAAACATGTACAGATTTTACAAAATTCCACCTTCCGATGCGAAAACGGAAAGATTCCGTATGACATACTGTTTGGTAGAAACGTGCACGAGGAATTTCAAAAGAGAACTAGCACGATGGGTAAGAAGGAAGACATATGGACAGAAGAAGAATGGATTAGTCTTATATCCGGTATGTCTACCGTTAGCGAAAAAGAAGAGGCTGATAGGTTTATGGAAAGTTCAGATTCTATAGATATTAAAGACATGGATTGCTGGAGGGACGACAGCAATTCTGCCAGTGAAATCAGGAACGAGCTTACGAAAGAGCCTCCCAATTTTAATTTTGTCAATGTTAAAAGCGAACCTTTGAACATGCATACCGAAGATTCTGTGTTCGAAGACATACTGGCTGATGATAAAATTAAGTCAGTCCCTGAGAACGAAGAATTGAAATGCAAGATCTGCCAGAAGCAGTATATGCGACTCGGTCACCTGAAAAACCATATGCAGTCGCATACCAAAGGAAAGAAGTTCGAGTGCACCTTGTGCAACAAGACGTTCCATGTTTGCAGTTTGTACGAGAAACATATGCGACAATCGCATCGACAAACGCATAGTTTAAACAGGACGAGAAGAAGCAGAGATCGTTCGCAAGAAGAAGAAACGATATCGAACGAGAAGCCGTCCGAATTGAATAGTTCCGCGAACGCAGAATCTACAGGAAAGAAATCGAAAACTGAGGACGAAGGCCCTAAGGCACCGAAACGTTTGTGCCTACTTAAGGAACGGAAAAGAGCGTCTACGGAGAAGGTAAGCAACGGAGAGTCATCTTTGGAATGCACTTACTGCAAGCAGAAATTTAGTTTCCCTAGCGTATTAAAAAggcacatgcgatctcacacgaacgaaaggccgtacgtttgcgagatttgtaacaagagtttcaaacagttagggcatctcagtcagcattcgttgacgcacaaggactaccgttcgttccagtgcgcggtctgcggaatcaagttcggcagtttgaccgcgttgaaggtgcacacacatcagcggaagcacaagggaggctacgtcacgaaatcgaaaaagcccattcggttgttcgaatgcgacaactgcaagaaggtcttcacgactaaaagcgtactggagcgacacgtactgacccattcgcacgagcgtctgtttccctgtatcgtttgcgggaaaaagttcaaacaagcgggccacgtgaagtcgcacatgttggttcacaccggcgagcggaagttcgaatgtacagtctgcaagaagaggttcagcctgcggaactcgctgaagaagcatatgtacgtgcacaatggggagaagccgtatcagtgcgacgtgtgcggcgcccggttcctcgaaaagaggaacttgaacggacacctgatgactcacacgaacgagcgtccgttccgctgcaagatctgcgggaaacggtacactttggcggacactttgcgacgtcacataagcgccgcccacgaagacggtcgcacgtatcaatgcgagatctgtgcgaaaatgttcaagcagctggcccatctttccgttcataagaaagtgcacaacgacgagcggccgttccagtgtcatctatgcgagaagaactttaagcataagaacgtcctgaagtctcatctggccattcacgcgaacgttaggccgttcgaatgcgacatctgcaaggccaccttcgtcaggaagaccaatctgcagacgcacatcgcctcctcccacatgaacgagaggccgtacgtttgcaccatttgtggcaaacggttcaagcaaattagccacttgaatggtcacgtggtggtgcacagtaacttaatgccttatcagtgcgactactgcgatcgacgttgcaacagactcgacaatttgaaaaaacatatGCGCCTTCATACGAAAAACAAGGAGGGAGCAGTTTAA
Protein Sequence
MNSHCDIVNKRLFRRGQVDVMDMPVKLTSNYKYFFVYEDQVSKFVVLKGLHENTASEVAMKLLDVLAIIGAPQVIQSNNGRKFAEQVVQELRFLWKDFVILHGDISENKGNNRDFKNLLECWAQRNPTTTWYEALKHVQILQNSTFRCENGKIPYDILFGRNVHEEFQKRTSTMGKKEDIWTEEEWISLISGMSTVSEKEEADRFMESSDSIDIKDMDCWRDDSNSASEIRNELTKEPPNFNFVNVKSEPLNMHTEDSVFEDILADDKIKSVPENEELKCKICQKQYMRLGHLKNHMQSHTKGKKFECTLCNKTFHVCSLYEKHMRQSHRQTHSLNRTRRSRDRSQEEETISNEKPSELNSSANAESTGKKSKTEDEGPKAPKRLCLLKERKRASTEKVSNGESSLECTYCKQKFSFPSVLKRHMRSHTNERPYVCEICNKSFKQLGHLSQHSLTHKDYRSFQCAVCGIKFGSLTALKVHTHQRKHKGGYVTKSKKPIRLFECDNCKKVFTTKSVLERHVLTHSHERLFPCIVCGKKFKQAGHVKSHMLVHTGERKFECTVCKKRFSLRNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDICKATFVRKTNLQTHIASSHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDYCDRRCNRLDNLKKHMRLHTKNKEGAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00024748;
90% Identity
iTF_00866838;
80% Identity
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