Basic Information

Insect: Lasioglossum calceatum
Gene Symbol: SCAND3_1
Assembly: GCA_963966675.1
Location: OZ016550.1:1515934-1518362[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.5e-05 0.006 17.6 3.4 2 23 279 300 278 300 0.97

2 15 0.007 0.76 10.9 6.9 1 23 306 329 306 333 0.96

3 15 0.00019 0.02 15.9 1.1 3 23 408 428 406 428 0.93

4 15 3.4e-06 0.00037 21.4 1.8 1 23 434 456 434 456 0.98

5 15 0.0037 0.41 11.8 1.2 1 21 462 482 462 486 0.91

6 15 9e-07 9.8e-05 23.2 0.8 1 23 501 523 501 523 0.98

7 15 5.5e-05 0.006 17.6 0.5 2 23 530 551 529 551 0.91

8 15 1.3e-05 0.0014 19.5 2.6 1 23 557 579 557 579 0.98

9 15 0.00081 0.088 13.9 0.2 1 23 585 607 585 607 0.99

10 15 5.5e-05 0.006 17.6 0.2 3 23 615 636 613 636 0.94

11 15 1.8e-05 0.002 19.1 1.3 1 23 642 664 642 664 0.98

12 15 0.0004 0.044 14.9 4.7 1 23 670 692 670 692 0.98

13 15 3.8e-06 0.00041 21.2 0.4 1 23 698 721 698 721 0.96

14 15 4e-06 0.00044 21.2 0.6 1 23 727 749 727 749 0.96

15 15 7e-07 7.7e-05 23.5 4.4 1 23 755 777 755 777 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.5e-05	0.006	17.6	3.4	2	23	279	300	278	300	0.97
2	15	0.007	0.76	10.9	6.9	1	23	306	329	306	333	0.96
3	15	0.00019	0.02	15.9	1.1	3	23	408	428	406	428	0.93
4	15	3.4e-06	0.00037	21.4	1.8	1	23	434	456	434	456	0.98
5	15	0.0037	0.41	11.8	1.2	1	21	462	482	462	486	0.91
6	15	9e-07	9.8e-05	23.2	0.8	1	23	501	523	501	523	0.98
7	15	5.5e-05	0.006	17.6	0.5	2	23	530	551	529	551	0.91
8	15	1.3e-05	0.0014	19.5	2.6	1	23	557	579	557	579	0.98
9	15	0.00081	0.088	13.9	0.2	1	23	585	607	585	607	0.99
10	15	5.5e-05	0.006	17.6	0.2	3	23	615	636	613	636	0.94
11	15	1.8e-05	0.002	19.1	1.3	1	23	642	664	642	664	0.98
12	15	0.0004	0.044	14.9	4.7	1	23	670	692	670	692	0.98
13	15	3.8e-06	0.00041	21.2	0.4	1	23	698	721	698	721	0.96
14	15	4e-06	0.00044	21.2	0.6	1	23	727	749	727	749	0.96
15	15	7e-07	7.7e-05	23.5	4.4	1	23	755	777	755	777	0.99

Sequence Information

Coding Sequence: ATGAATTCGCATTGTGATATCGTGAACAAGAGACTGTTTCGCCGTGGACAAGTTGATGTCATGGACATGCCAGTCAAATTAACCAGCAATTACAAGTACTTCTTCGTTTACGAGGATCAAGTATCTAAGTTCGTTGTGCTGAAAGGATTACACGAAAATACTGCGAGCGAAGTGGCTATGAAACTTCTAGATGTATTAGCCATCATCGGAGCACCGCAGGTTATACAAAGTAACAACGGACGCAAGTTCGCAGAACAGGTTGTGCAGGAATTACGTTTTCTATGGAAAGATTTTATTATTCTTCATGGAGACATTTCCGGGAACAAAGAGAACAACAGAGATTTTAAGAACTTGCTCGAATGCTGGGCTCAGAGAAACCCTACCACAACGTGGTACGAAGCTCTGAAACATGTACAGATTTTACAAAATTCCACCTTTCGATGCGAAAACGGAAAGATTCCGTATGACATACTGTTTGGTAGAAACGTGCACGAGGAATTTCAAAAGAGAACTAGCACGATGGGTAAGAAGGAAGACATATGGACAGAAGAAGAATGGATTAGTCTTGTATCCGATACGTCTACCGTTAGCGAAAAGGAAGAGGCTGATAGGTTTATGGAAAGTTCAGATTCTATAGATATTAAAGACATGGATTGCTGGAGGGACGACAGCAATTCTGCCAGCGAAATCAGGAACGAGCTTACGAAAGAGCCTCccaattttaattttgtcaaTGTTAAAAGCGAACCTCTGAACATGCATACCGAAGATCCTGTGTTCGAAGACATACTGGCCGATGATAAAGTTAAGTCAGTCCCTGAGAATGAAGAATTGAAATGCAAGATCTGCCAGAAGCAATATATGAGACTCGGTCACCTGAAAAACCATATGCAGTCGCATACCAAAGGAAAGAAGTTCGAGTGCACCTTGTGCAACAAGACGTTCCATGTTTGCAGCTTGTACGAGAAACATATGCTACAATCGCATCGACAAACGCATAGTTTAAACAGAACGAGAAGAAGGAGAGATCGTTCGCAAGAAGAAGAGACAATATTCAACGAGAAATCGTCCGAATTGAATAGTTCCGCGAACGCAGATTCTACTGAAAAGAAATCGAAAACTGAGGACGAAGGCCCTAAGGCACCGAAACGTTTGTGCCTACTTAAGGAACGGAAAAGAGCGTCTACGGAGAAGGTAAGCAACGGAGAGTCATCTTTGGAATGCATTTACTGCAAGCAGAAATTTAGTTTCCCTAGCGTATTAAAAAGGCACATGCGATCTCACACGAACGAAAGGCCATACGTTTGCGAGATTTGTAACAAGAGTTTCAAACAGTTAGGGCATCTCAGTCAGCATTCGTTGACGCACAAGGACTACCGCTCGTTCCAGTGCGCGGTCTGCGGAACCAAGTTCGGCAGTTTGACCGCGTTGAAGGTGCACACACATCAGCGGAAGCACAAGGGAGGCTACGTCACGAAATCGAAAAAGCCCATTCGGTTGTTCGAATGCGAAAACTGCAAGAAGGTCTTCACGACTAAAAGCGTGCTGGAGCGACACGTACTGACCCATTCGCACGAGCGTCTGTTCGCCTGTATCGTTTGCGGGAAAACGTTCAAACAAGCGGGCCACGTGAAGTCGCATATGTTGGTTCACACCGGCGAGCGGAAGTTCGAATGTACAGTCTGCAAGAAGAGGTTCAGCCTGCGGAACTCGCTGAAGAAGCATATGTACGTGCACAATGGGGAGAAGCCGTATCAGTGCGACGTGTGCGGCGCCCGGTTCCTCGAAAAGAGGAACTTGAACGGACACCTGATGACTCACACGAACGAGCGTCCGTTCGGCTGCAAGATCTGCGGGAAACGGTACACTTTGGCGGACACTTTGCGACGTCACATAAGCGCCGCCCACGAAGACGGTCGCACCTACCAATGCGAGATCTGTGCGAAAATGTTCAAGCAGCTGGCCCATCTTTCCGTTCATAAGAAAGTGCACAACGACGAGCGGCCGTTCCAGTGTCATCTGTGCGAGAAGAACTTTAAGCATAAGAACGTCCTAAAGTCTCATCTGGCCATTCACGCGAACGTTAGGCCGTTCGAATGCGACATCTGCAAGGCCACCTTCGTCAGGAAGACCAACCTGCAGACGCACATCGCTTCCTCCCACATGAACGAGAGGCCGTACGTTTGCACCATTTGTGGCAAACGGTTCAAGCAAATTAGCCACTTGAATGGTCACGTGGTGGTGCACAGTAACTTAATGCCTTATCAGTGCGACTACTGCGATCGACGTTGCAACAGACTCGACAATTTGAAAAAACATATGCGCCTTCATACGAAAAACAAGGAGGGAGTAGTTTAA
Protein Sequence: MNSHCDIVNKRLFRRGQVDVMDMPVKLTSNYKYFFVYEDQVSKFVVLKGLHENTASEVAMKLLDVLAIIGAPQVIQSNNGRKFAEQVVQELRFLWKDFIILHGDISGNKENNRDFKNLLECWAQRNPTTTWYEALKHVQILQNSTFRCENGKIPYDILFGRNVHEEFQKRTSTMGKKEDIWTEEEWISLVSDTSTVSEKEEADRFMESSDSIDIKDMDCWRDDSNSASEIRNELTKEPPNFNFVNVKSEPLNMHTEDPVFEDILADDKVKSVPENEELKCKICQKQYMRLGHLKNHMQSHTKGKKFECTLCNKTFHVCSLYEKHMLQSHRQTHSLNRTRRRRDRSQEEETIFNEKSSELNSSANADSTEKKSKTEDEGPKAPKRLCLLKERKRASTEKVSNGESSLECIYCKQKFSFPSVLKRHMRSHTNERPYVCEICNKSFKQLGHLSQHSLTHKDYRSFQCAVCGTKFGSLTALKVHTHQRKHKGGYVTKSKKPIRLFECENCKKVFTTKSVLERHVLTHSHERLFACIVCGKTFKQAGHVKSHMLVHTGERKFECTVCKKRFSLRNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFGCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDICKATFVRKTNLQTHIASSHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDYCDRRCNRLDNLKKHMRLHTKNKEGVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00024748;
90% Identity: iTF_00866838;
80% Identity: -