Nmel000989.1
Basic Information
- Insect
- Nomia melanderi
- Gene Symbol
- SCAND3
- Assembly
- GCA_003710045.1
- Location
- NW:287814-291883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00022 0.013 15.0 3.9 2 23 279 300 278 300 0.97 2 15 0.00041 0.025 14.1 3.4 1 23 306 329 306 329 0.97 3 15 5.1e-06 0.00031 20.1 1.8 2 23 408 429 407 429 0.97 4 15 3.6e-06 0.00022 20.6 1.8 1 23 435 457 435 457 0.97 5 15 6.5e-05 0.004 16.6 0.7 1 23 463 485 463 485 0.98 6 15 1.7e-07 1e-05 24.8 0.9 1 23 500 522 500 522 0.98 7 15 6.3e-05 0.0038 16.7 0.6 2 23 529 550 528 550 0.91 8 15 5.4e-06 0.00033 20.0 2.3 1 23 556 578 556 578 0.98 9 15 0.00027 0.016 14.7 0.2 1 23 584 606 584 606 0.99 10 15 2.1e-06 0.00013 21.3 0.3 1 23 612 635 612 635 0.94 11 15 1.1e-05 0.00066 19.1 1.3 1 23 641 663 641 663 0.98 12 15 0.00024 0.014 14.9 4.7 1 23 669 691 669 691 0.98 13 15 3.6e-06 0.00022 20.6 0.2 1 23 697 720 697 720 0.96 14 15 2.4e-06 0.00014 21.2 0.6 1 23 726 748 726 748 0.96 15 15 4.2e-07 2.5e-05 23.5 4.4 1 23 754 776 754 776 0.99
Sequence Information
- Coding Sequence
- ATGAATTCACATTGTGATATTGTGAACAAGAGACTATATCATCGTGGACAAATTGATGTAATAGACATGCCATTGAAATTAACTAGCAATTATAAGTATTTTTTCGTGTATGAAGATCAAGTATCTAAATTTGTTGTGTTGAAAGGATTACACGAAAATACTGCAAGCGAGGTGGCTATGAAACTTTCAGACATATTAGCCATTATTGGGGCACCACAGGTTTTACAAAGTAACAATGGGCGTAAGTTTGCAGAGCAAGTTGTACAGGAATTACGCCTTTTGTGGAAGGATTTTGTTATTCTTCATGGCGAAATGTCTGAAAACAAAGAGACCAATAGAGATTTTAAGAATTTACTCGAATGTTGGGCCCAGAGAAACCCTACGAAAACATGGTATGAAGCTCTGAAGCATGTAcagattttacaaaattctacatttcaaTGCGAAAATGGTAAGATTCCGTACGATATAATGTTTGGAAGGAACGTGCACGAAGAATTTCAGAAGAGAACCAGTGTGGTAGAtacgaaggaaaatatatgGACAGAAGAAGAATGGATTAATCTCTTATCTAACAAGTCTACTAAAAGTGAAAACGAAAGGACTGAATTCACTGAAAATTCAGATTCTGTAGAGATTAGAGATATAGATAGTtcACGGGATGGTGACAGTGATTCTACTAATGAAGTCAGAAACGAGCTTCCAAGAGAGCCTCCTGGTTTTAACTTCGTCAACGTTAAAAGCGAACCCTTAAATATGCATACCGAAGATTCTGTGTTCGAAGATGAATCAACGGATGACAAAACGAACTCAACTTCCGAGAGTCAAGATTTGAAATGCAAAGTATGCCAGAAGCAGTACATGAAACTTGGTCACCTGAAGAATCACATGAAATCGCATGCCAAAGGAAAGAAGTTCGAGTGTAACTTATGCAACAAAACGTTTCACGTGTTAAGTTTATACGAGAAACACACGCGACAATCCCATAGACAAAACAAGCTGCACACTTTGAACAGAACGAGAAGAAGTAAAAATCTTTCACAGGAGGAAACAGTGTCGAGCACGAAATCATCAGAATTGAACAACTCTTCGGACGTGAACTTGGACGAGACCGAATTTAACGTTACAGAGGAGAGTCCTAAAGCGTCGAAACGTTTGTGTCTTCTCaaggaaaggaagaaagtCGCCTCCGAGAAAGTGAACAACGGAGAGCCATCCTTGGAGTGCACCTATTGCAagcagaaattcaatttccctaGCGTGCTGAAGAGGCACATGCGATCTCACACAAACGAAAGACCGTACATCTGCGAGATTTGCAATAAAAGCTTCAAACAGTTGGGACATCTGAGTCAGCACTCGTTAACGCACAAGGATTACCGTTCGTTCCACTGTGCGGTCTGCGGGATAAAGTTCGACTCTTTAGGCTCGTTGAAGGTGCACACGCAGACGCACAAAGAGGACTACATCTCGAAGCCGAAAGAGTCGTTCCGTTTGTTCGAATGTGACAATTGCAAGAAGGTCTTCACCACCAAGAGCGTGCTGGAGCGACACATACTGACTCACTCCCACGAGCGTCAGTTTGCTTGCATCGTCTGTGGGAAGAGATTCAAGCAGGCTGGCCACGTGAAGTCGCACATGTTGGTTCACACTGGCGAGCGGAAGTTCGAGTGCACGGTCTGCAAGAAGAGATTCAGCCTCTCGAACTCCTTGAAGAAGCACATGTACGTGCACAACGGGGAGAAGCCGTACCAGTGCGACATATGCGGTGCACGGTTCCTCGAGAAGAGGAACCTGAACGGTCACCTGATGACCCACACGAACGAACGTCCGTTCCGCTGCAAGATCTGCGGGAAACGGTACACGCTGGCGGACACTCTGCGCCGTCACATAAGCGCCGCCCACGAGGATGGACGCACGTACCAGTGCGAGATCTGCGCGAAGATGTTCAAGCAGCTGGCACACCTTTCTGTCCACAAGAAAGTGCACAACGACGAGAGACCGTTCCAGTGTCATCTGTGCGAGAAGAACTTCAAGCATAAAAACGTCCTGAAGTCTCACTTAGCCATCCACGCGAATGTCAGGCCGTTCGAGTGCGACGTTTGTAAAGCTACATTCGTGAGGAAGACCAACCTGCAGACGCACATCGCGTCGGCCCACATGAACGAGAGGCCGTACGTCTGTACCATCTGTGGGAAACGGTTCAAGCAGATCAGTCACCTGAACGGTCACGTGGTGGTGCACAGCAATCTGATGCCCTATCAGTGCGACTACTGCGACCGACGCTGCAACAGACTCGACAATTTAAAGAAACACATGCGCCTTCACACGAAGAACAAAGAAGGCGTGGTGTAA
- Protein Sequence
- MNSHCDIVNKRLYHRGQIDVIDMPLKLTSNYKYFFVYEDQVSKFVVLKGLHENTASEVAMKLSDILAIIGAPQVLQSNNGRKFAEQVVQELRLLWKDFVILHGEMSENKETNRDFKNLLECWAQRNPTKTWYEALKHVQILQNSTFQCENGKIPYDIMFGRNVHEEFQKRTSVVDTKENIWTEEEWINLLSNKSTKSENERTEFTENSDSVEIRDIDSSRDGDSDSTNEVRNELPREPPGFNFVNVKSEPLNMHTEDSVFEDESTDDKTNSTSESQDLKCKVCQKQYMKLGHLKNHMKSHAKGKKFECNLCNKTFHVLSLYEKHTRQSHRQNKLHTLNRTRRSKNLSQEETVSSTKSSELNNSSDVNLDETEFNVTEESPKASKRLCLLKERKKVASEKVNNGEPSLECTYCKQKFNFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGIKFDSLGSLKVHTQTHKEDYISKPKESFRLFECDNCKKVFTTKSVLERHILTHSHERQFACIVCGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGEKPYQCDICGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDYCDRRCNRLDNLKKHMRLHTKNKEGVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00024748;
- 90% Identity
- -
- 80% Identity
- -