Hrub014971.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Halictus rubicundus
Gene Symbol
SCAND3
Assembly
GCA_028454235.1
Location
CM052180.1:16238329-16240748[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00027 0.022 15.2 2.0 2 23 279 300 278 300 0.97
2 15 0.00019 0.015 15.7 4.0 1 23 306 329 306 329 0.97
3 15 3.4e-06 0.00028 21.1 1.7 2 23 406 427 405 427 0.97
4 15 5.1e-06 0.00042 20.6 1.8 1 23 433 455 433 455 0.97
5 15 0.00098 0.08 13.4 0.7 1 23 461 483 461 483 0.98
6 15 5.2e-07 4.2e-05 23.7 0.8 1 23 498 520 498 520 0.98
7 15 8.9e-05 0.0073 16.7 0.6 2 23 527 548 526 548 0.91
8 15 7.6e-06 0.00062 20.0 2.3 1 23 554 576 554 576 0.98
9 15 0.00075 0.061 13.8 0.3 1 23 582 604 582 604 0.99
10 15 3e-06 0.00024 21.3 0.3 1 23 610 633 610 633 0.94
11 15 1.5e-05 0.0012 19.1 1.3 1 23 639 661 639 661 0.98
12 15 0.00033 0.027 14.9 4.7 1 23 667 689 667 689 0.98
13 15 5e-06 0.00041 20.6 0.2 1 23 695 718 695 718 0.96
14 15 3.3e-06 0.00027 21.2 0.6 1 23 724 746 724 746 0.96
15 15 5.9e-07 4.8e-05 23.5 4.4 1 23 752 774 752 774 0.99

Sequence Information

Coding Sequence
ATGAATTCGCATTGCGATATCGTGAACAAGAGACTATGTCGCCGTGGGCAAGTTGATGTCATGGACATGCCGGTCAAATTAACCAGCAATTACAAGTACTTCTTTGTTTATGAGGATCAAGTATCTAAGTTTGTTGTATTGAAAGGATTACACGAAAATACTGCGAGGGAAGTGGCTATGAAACTTCTAGACGTATTAGCCATCATCGGAGCACCACAGGTTATACAAAGTAACAATGGACGTAAGTTCGCAGAGCAGGTTGTGCAGGAATTACGTTTTTTATGGAAAGATTTTATTATTCTTCACGGAGATATTTCCGAAAATAAGGAGAACAACAGAGATTTTAAGAACTTGCTCGAATGCTGGGCTCAGAGAAACCCTACCACAACGTGGTACGAAGCTCTGAAACATGTACAGATTTTACAAAATTCCACCTTTCGATGCGAAAATGGAAAGATTCCGTACGACATATTGTTCGGAAGAAACGTGCACGAGGAATTTCAAAAGAGAACTAGCACGGTGGATAAGAAAGAAAACATATGGACAGAAGAAGAATGGATTAATCTTGTATCCGATAAGTCTACCATAAGCGAAAAGGAAGAGGCTGATAAGTTTATGGAAAGTTCAGATTCTATAGATATTAAAGACATGGATAGCTGGAGAGATGACAGCAATTCCGCCAGCGAAATCAGGAACGACCTTTCAAAAGAGCCTCCCGATTTTAATTTTGTCAACGTTAAAAGCGAACCTTTGAATATGCATACCGAAGATTCTGTGTTCGAAGACGAACTGGCCAATGATAAAGCAAACTCGGTCCCTGAGAACGAAGATTTGAAATGCAAGGTGTGCCAGAAGCAGTATATGAAGCTCGGATACCTGAAAAACCATATGAAGTCGCACACCAAAGGGAAGAAGTTCGAATGCACCTTCTGCAACAAGACGTTCCATGTTTTAAGTCTGTACGAGAAACATATGCGACAATCGCATCGGCAAACGCGTAGTTTAAACAGGATGAGAAGGAGCGGAGATCGTTCGCAGGAAGAAACGATACCAAACGTGAATTCGCCAAAATTGAATAGTTCTGCGAATGCAGATTCTACTGAAACGAAATCGACGGCTGAGGACGAGGGCCCTAAACCACCGAAACGTTTGCGCCTCTTTAAGGAACGGAAAAGACTGTCTGCGGAGAAGATAAACAACGGAGAGTCATCTTTGGAATGCAGCTATTGCAAGCAGAAATTTAGTTTCCCTAGCGTATTGAAAAggcacatgcggtctcacacgaacgaaaggccatacatttgcgagatttgtaacaagagtttcaaacagttagggcatcttagtcagcattcgttaacgcacagagattaccgttcgtttcagtgtgcggtttgtgaaattaggttcggcacgttgaccgcgttgaaggtgcacacgcacacgcacaagggggactacgcctcgaaaccgaaacagtcttttcggttgttcgaatgcgacaattgcaagaaagtcttcaccactaaaagcgtgctggagcggcacattttgagccattcgcatgagcgtctgtttgcctgtatagtttgcgggaaaagattcaaacaagcgggccacgtgaagtcgcacatgttggttcataccggcgagcggaagttcgaatgtacagtctgcaagaaaaggttcagcctgtcgaactcgctgaagaagcacatgtacgtacacaatggagagaagccgtatcagtgcgacatgtgcggcgcccggttcctcgaaaagagaaacttgaacggacacctgatgactcacacgaacgaacgtccgttccgctgcaagatctgtgggaaacggtacacattggcggacactttgcggcgtcacataagcgccgcccacgaagacggtcgcacctaccaatgcgagatctgtgcgaaaatgtttaagcagctggcccatctttccgttcacaagaaggtgcacaacgacgagcggccgttccagtgtcatctgtgcgaaaaaaactttaagcataagaacgtcctgaagtctcatctggccattcacgcgaacgtcaggccgttcgaatgcgacgtctgcaaggccaccttcgtcagaaagaccaacttgcaaacgcacatcgcctccgcccacatgaacgagaggccgtacgtttgcactatttgtggcaaacggttcaagcaaattagccatttgaatggccatgtggtggtgcacagtaatttaatgccttatcagtgcgattattgcgaccgacgctgcaacagactcgacaatttgaaaaaacatatgcgCCTCCATACGAAAAACAAGGAGGGAGTAGTTTAA
Protein Sequence
MNSHCDIVNKRLCRRGQVDVMDMPVKLTSNYKYFFVYEDQVSKFVVLKGLHENTAREVAMKLLDVLAIIGAPQVIQSNNGRKFAEQVVQELRFLWKDFIILHGDISENKENNRDFKNLLECWAQRNPTTTWYEALKHVQILQNSTFRCENGKIPYDILFGRNVHEEFQKRTSTVDKKENIWTEEEWINLVSDKSTISEKEEADKFMESSDSIDIKDMDSWRDDSNSASEIRNDLSKEPPDFNFVNVKSEPLNMHTEDSVFEDELANDKANSVPENEDLKCKVCQKQYMKLGYLKNHMKSHTKGKKFECTFCNKTFHVLSLYEKHMRQSHRQTRSLNRMRRSGDRSQEETIPNVNSPKLNSSANADSTETKSTAEDEGPKPPKRLRLFKERKRLSAEKINNGESSLECSYCKQKFSFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHSLTHRDYRSFQCAVCEIRFGTLTALKVHTHTHKGDYASKPKQSFRLFECDNCKKVFTTKSVLERHILSHSHERLFACIVCGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGEKPYQCDMCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDYCDRRCNRLDNLKKHMRLHTKNKEGVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00024748;
90% Identity
iTF_00762695;
80% Identity
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