Acon007607.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963555685.1
- Location
- OY743109.1:20477432-20493628[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-77 1.9e-72 245.1 27.6 1 297 130 402 130 404 0.88 2 2 1 3.5e+04 -6.6 17.2 1 48 401 447 401 475 0.70
Sequence Information
- Coding Sequence
- ATGGGTAGAACATCCAAATTGGCAACGCCTGGTAATAGTGACGAAGAGAGTGGAGACGCCTTTACTGATGGTGATTTTGATGACTCTGACGAAGACACGCTAGTTGAGAGAAACGAAGAAGCCTCGCCGTCACTTGTGCCAGTCAACGAAGCAGTAAATAGTGAAGCTAAAAAAGTAAACGGCTGTGAGTCGTCTGCTAATGACATCAAGTTGCAATCTAATGTCCTCGACACTCAAACTAAAATGAATGGAGTCAAGAATTATGACAATGGACACAGTAGTGAAGATAATGTAACATTTGGAAATGGAATAACGGATACACGAAGGGATTCCCATGTAGAACAAAATCCGTCAATCGTGGGAATATTAGGCGACCAGCAGAATCATGCCGAGCAGCGGTTGGCGGCGCGTCGAGCGGCGCGTGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGGGAGCAAGAAGACCATGCCGACAAGGCCTACGACATGTATGCAGAGACGGTGGGCCGCCGCGGCGGGGCGCGGCTGGCGGCGCTGTCGCCCGGCGTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGTCGACGACAGCTTCAGCATCAAAGACCTTAGGCACGAGCTCAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGGGCTACCAGCTCGAGCTGCTCAAGGACAGGATCGAGGAACTGCACGAGGAGTACGCGCAGCTGCAGCGCGAGCACAAAGAGAAATGTTCGGCGCACGAGCGCTTAAAGCGGTCGCACGTGTCGCTGGAGCGCGAGCTGGAGGcggcgcggggcgcggtgcGCGCGCGGGACGCGGCGGCGCAAGTCGCGGGGTTCGCCTTCGTGGACGCCGCCGCCGACGGCGCGCCCGCGCTCGCGCTCGTCTCGCACCAGGCCGAGCAGCTGCTCAGCGACGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGCTGAGTTCGAAGCAGTCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTCAACGAAGAGCGCGCCGCGCGGCAGAACGGCGTCGCCAACCACCACGACGCCGAGTACGAGAGCGAACTGGAGACACTccgcaagtgcgtgtcggaggcgaaggcgcgggcggcgcgcgcgGAGGCGGAGGCGGCGCTGCAGGCGGCCGGCGTGGCGCGGCTCGAGGCGCAGCTGGCGCGGCTGCGGGCGCGGCAGGAGCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGCCTGCAGAGGGAGGCTCGGGAGGCCCTGAATCGCGTGGAAGAGCTGGAGACGGAGAACAGCCACCTGACGAAGCGGCTCGACAAGCTGAAGAACGCCAAGTCGGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGRTSKLATPGNSDEESGDAFTDGDFDDSDEDTLVERNEEASPSLVPVNEAVNSEAKKVNGCESSANDIKLQSNVLDTQTKMNGVKNYDNGHSSEDNVTFGNGITDTRRDSHVEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGARLAALSPGVHSPRRSSEDSVDDSFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKRSHVSLERELEAARGAVRARDAAAQVAGFAFVDAAADGAPALALVSHQAEQLLSDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDAEYESELETLRKCVSEAKARAARAEAEAALQAAGVARLEAQLARLRARQEHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013042; iTF_00146438; iTF_00720310; iTF_01302358; iTF_01220672;
- 90% Identity
- iTF_00013042; iTF_01302358;
- 80% Identity
- -