Epin013221.1
Basic Information
- Insect
- Euzophera pinguis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947363495.1
- Location
- OX376159.1:16504108-16525285[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-78 1.6e-73 248.2 24.3 1 264 123 373 123 395 0.90 2 2 1 2.8e+04 -7.0 17.6 1 48 397 443 397 471 0.70
Sequence Information
- Coding Sequence
- ATGGGCAAAGTATCCAAATTAGAAACACCGGGAAATAGCGACGAAGAAAGCGGTGACGCATTTACTGATGGTGATTTTGAAGAATCCGATGATGAGACGGTAGTTGAGAGAAATGGAAACGTTGAGTCATCTCATCTCCCAGTCATTGAAGCAGTAAATAGTGAAACAAAAAAGCTGAACGGTTTTGAGTCAATTAAAGCCTACGAGAGCCAGCCTAAGATGAACGGAGTCAAATCTTGCGATAATGGACACAATAGCGAAGTAGAAAACGCAACATTTGGAAATGGATTACTGGATATGAGACGGGATTCTAATGTGGAGCAAAATCCATCCATCGTGGGAATACTTGGCGATCAGCAGAATCACGCCGAACAACGTCTAGCGGCGCGTCGAGCGGCGCGGGCAGAGGCGCGTGAGATACGCATGCGGGAGCTTGAGAGACAGCAGCGTGAGCAGGAGGATCATGCCGATAAGGCGTACGACATGTATGCGGAGACGGTGGGCAGACGGGGCGGGCCGCGGTTGGCGGCGCTGTCGCCCGGCGTGCTCTCTCCGCGTCGCAGTTCCGAGGATTCCGTCGACGACACTTTCAGCCTCAAAGACCTCAGGCACGAGCTTAAAGAAGTGGAAGAGAAGTTCCGGAAGGCGATGATCCTGAATGCCCAACTAGACAATGACAAGGCGGCGCTGGGGTACCAATTAGAACTACTCAAAGACAGGATAGAGGAGCTGCACGAGGAGTATGCGCAACTTCAGCGAGAGCACAAAGAAAAATGTTCAGCGCACGAGCGTTTAAAACGCGAGCACGCGTCTCTCGAGCGCGAACTCAACTCCGCAAGAGACGCCGTTCGCGCGCGAGACGCCGCTGCTCAAGTTGCGGGGTTCGCGTTTGTGGATGCCGTTGTAGAGGGGAATGAAACTGGACCTGCGTTAGCGCTGGTGTCGCACCAGTCTGAGCAATTGTTGAATGATGCTGGGGAAGGGACGTTAGACGTGCGGTTGCAAAAGCTACTGGGTTCGAAGCAAGCCTTGGAGTCAGAGGTCCGGAAGCTGAAATTACAGCTGAATGAGGAGCGGTCAGCCCGGCAGAACGGAGTGGCCAACCATCATGATGCCGAGTATGAGAGCGAATTGGAGGCGCTCCGCAAGTGCGTGTCGGAGGCCAAGGCGCGGGCGGCGCGCGGCGAAGCCGAGGCCGCACTGCAAGCCGCCGCTGTGGCGCGTCTCGAGGCGCAGGTGGCGCGTCTGCGAGCCCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGAGAGAGGCACGAGAGGCCCTGAACCGCGTCGAAGAGTTGGAAACCGAGAACAGCCATCTTACAAAGAGACTCGACAAACTGAAGAACGCAAAGTCCGCGCTCCTTAAGGACCTGTGA
- Protein Sequence
- MGKVSKLETPGNSDEESGDAFTDGDFEESDDETVVERNGNVESSHLPVIEAVNSETKKLNGFESIKAYESQPKMNGVKSCDNGHNSEVENATFGNGLLDMRRDSNVEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGPRLAALSPGVLSPRRSSEDSVDDTFSLKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLERELNSARDAVRARDAAAQVAGFAFVDAVVEGNETGPALALVSHQSEQLLNDAGEGTLDVRLQKLLGSKQALESEVRKLKLQLNEERSARQNGVANHHDAEYESELEALRKCVSEAKARAARGEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012005;
- 90% Identity
- iTF_00146438;
- 80% Identity
- -