Pint002501.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_027563975.2
- Location
- CM050465.1:10706170-10716370[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-75 2.8e-71 240.6 26.7 1 297 123 400 123 403 0.88 2 3 1 2.2e+04 -11.1 16.1 1 41 399 439 399 462 0.60 3 3 0.3 6.6e+03 -3.7 6.8 134 166 436 468 422 477 0.48
Sequence Information
- Coding Sequence
- ATGGGCGAAACATCaaaattagaaacaccagGTAATAGTGACGAAGAGAGCGGAGACGCATTTACCGACGGTGACTTTGAAGACTCCGAGGACGAGACGGTAGTCGAGAGAAATGGAAGTGTTGAAACATCAAATATACCAGTTAATGAAGCAGTAAACGGCGAAGCGAAAACAAATGGTTGTGAGTCAATTGCTGATGTCTATGACAGCCAGGCGAAGATGAATGGAGTAAAGAATTACAATAATGGACACAATAGTGAAGTAGACAATGCTAATTTTGATAATGGATTACTAGATGTACGAAGGGATTCTCTTGTGGAACAAAATCCCTCTATCGTGGGAATACTGGGCGATCAACAGAATCATGCCGAACAGCGGCTGGCGGCGCGTCGAGCGGCGCGTGCGGAGGCGCGCGAGATCCGCATGAGAGAGCTGCAGAAGCAGCAACAAGAACAGGAGAACCATGCCGACAAGGCGTACGATATGTATGCAGAGTCGGTGGGCCGCCGCGCGGGGTCGCGGCTGGCGGCGCTGTCGCCCGCCGTGCACTCGCCGCGGCGCAGCTCCGAGGACTCCGTCGACGACACCTTCACCCTCAAGGAACTCAGGCACGAGCTCAAGGAGGTGGAGGAGAAGTTCCGCAAAGCCATGATCCTGAACGCCCAGCTGGACAACGACAAGGCGGCGCTGGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTCCACGAGGAATATGCGCAACTCCAGCGCGAGCACAAAGAGAAATGTTCAGCGCACGAGCGTTTAAAGCGCTCGCACGCGTCGCTCGAGCGCGAACTAGCGAGCGCACGCGACGCCGTGCGCGCGCGCGACGGCGCCGCGCTCGCCGCGGGCTTCGCGTTCGTGGACGCGGCCTCAGCGCCCGAGGGGGGCGGGGCGGGGCCGGCGCTGGCGCTCGTGTCGCAGCAGTCTGAGCAGCTGCTCACTGACGCGGGGGAGGGCACGCTGGACGTGCGGTTGCAGAAACTGCTAGCCTCGAAGCAATCGTTGGAGTCAGAAGTTCGCAAGCTGAAGTTGCAGCTCAACGAGGAGCGCGCGGCCAGGCAGAACGGCGTCGCCAACCATCACGACGCCGAGTATGAGAGCGAGTTGGAGACGCTGCGCAGGAGCGTGTCGGAGAGCAaggcgcgcgcggcgcgggcGGAGGCGGAGGCGGCGCTGCAGGCCGCGGCGGCTGTGCGGCGTGAGGCTCAGCTGGCGAGGCTGCGCGCGCGCCAGGAGCGCCAGGACGGGCTCGAGGAGCTGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGCGAGGCTCGGGAAGCCCTCAATCGCGTGGAAGAGTTGGAGACAGAGAACAGCCACCTGACGAAGAGACTGGACAAACTGAAAAACGCCAAGTCCGCGCTGCTCAAGGATCTGTGA
- Protein Sequence
- MGETSKLETPGNSDEESGDAFTDGDFEDSEDETVVERNGSVETSNIPVNEAVNGEAKTNGCESIADVYDSQAKMNGVKNYNNGHNSEVDNANFDNGLLDVRRDSLVEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELQKQQQEQENHADKAYDMYAESVGRRAGSRLAALSPAVHSPRRSSEDSVDDTFTLKELRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKRSHASLERELASARDAVRARDGAALAAGFAFVDAASAPEGGGAGPALALVSQQSEQLLTDAGEGTLDVRLQKLLASKQSLESEVRKLKLQLNEERAARQNGVANHHDAEYESELETLRRSVSESKARAARAEAEAALQAAAAVRREAQLARLRARQERQDGLEELLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012005;
- 90% Identity
- -
- 80% Identity
- -