Arep007236.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963576875.1
- Location
- OY756219.1:21838858-21856452[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-78 2.6e-73 247.9 25.4 1 298 130 407 130 409 0.90 2 2 0.59 2e+04 -4.6 14.2 1 47 405 450 405 468 0.75
Sequence Information
- Coding Sequence
- ATGGGTAGAACATCCAAATTGGCAACGCCTGGTAATAGCGACGAAGAGAGTGGAGACGTCTTTACTGATGGTGATTTTGATGACTCTGACGAAGACACGCTAGTTGAGAGGAACGATGACGCCGCACCATCACATCTGCCAGTCAATGAAGCAGTAAACAGCGAAGGTAAAAAAGTAAACGGCTGTGAGTCGTCTTCTAATGACATTAAATTGCAAACTAATGATCTAGAAACTCAACCTAAAATGAATGGAGTCAAGAATTATGACAATGGACACAGTAGTGAAGATAATGTTACATTTGAAAATGGATTATCGGATACGCGAAAGGATTCCCATGTAGACCAAAATCCATCAATCGTGGGAATACTAGGCGGCCAGCAGAATCATGCCGAACAACGCCTGGCGGCGCGTCGAGCGGCGCGGGCGGAGGCACGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGGGAACAAGAAGACCATGCCGACAAGGCGTACGACATGTATGCAGAGACGGTGGGACGCCGCGGCGGGTCGCGGCTGGCGGCGCTGTCGCCCGGCGTGCATTCGCCGCGGCGCAGCTCTGAGGACTCCGTCGACGACAGCTTCAGCATCAAAGACCTCAGGCACGAGCTCAAAGAGGTGGAGGAAAAGTTCCGCAAAGCGATGATCCTGAACGCACAGATGGACAACGACAAGGCGGCGCTGGGCTACCAGCTCGAGCTGCTTAAAGACAGGATAGAGGAACTGCATGAGGAGTACGCGCAACTGCAGCGCGAGCACAAAGAGAAATGTTCGGCGCACGAGCGTTTAAAGCGCGAGCACGCGTCACTGGAGCGCGAACTGAACAGTGCGCGAGACGCGGTGCGGGCGCGGGACGCCGCGGCGCAGCTCGCCGGGTTCGCGTTCGTGGACGCGGCCGGCGGGGCCGGGGGGGACGGCGGGCCCGCGCTGGCGCTCGTGTCGCACCAGTCCGAACAGCTGCTCAACGACGCGGGAGAAGGCACGCTCGACGTGCGGTTGCAAAAGCTGCTGAGTTCCAAGCAGTCGCTGGAGTCGGAGGTCCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGTCGCCAACCACCACGACGCCGAGTACGAGAACGAATTGGAGACGCTccgcaagtgcgtgtcggaggCGAAGGCCCGCGCGGCGCGCGCCGAGGCCGAGGCGGCGCTGCAGGCGGCCGGCGTGGCGCGCCTCGAGGCGCAGGTGGCGCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGAGGGAGGCTCGGGAGGCCCTGAATCGCGTCGAAGAACTGGAGACGGAGAACAGCCACCTGACGAAGCGGCTCGACAAGCTGAAGAACGCCAAGTCCGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGRTSKLATPGNSDEESGDVFTDGDFDDSDEDTLVERNDDAAPSHLPVNEAVNSEGKKVNGCESSSNDIKLQTNDLETQPKMNGVKNYDNGHSSEDNVTFENGLSDTRKDSHVDQNPSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLAALSPGVHSPRRSSEDSVDDSFSIKDLRHELKEVEEKFRKAMILNAQMDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLERELNSARDAVRARDAAAQLAGFAFVDAAGGAGGDGGPALALVSHQSEQLLNDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDAEYENELETLRKCVSEAKARAARAEAEAALQAAGVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012005;
- 90% Identity
- iTF_00012005;
- 80% Identity
- -