Rfor007459.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963082605.1
- Location
- OY720209.1:2475039-2496065[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-78 1.7e-73 248.5 27.4 1 297 131 406 131 408 0.89 2 2 0.99 3.3e+04 -5.3 15.5 1 48 405 451 405 478 0.69
Sequence Information
- Coding Sequence
- ATGGGTAGATCATCCAAATTGGCGACGCCTGGCAATAGCGACGAAGAGAGCGGAGACGCCTTCACCGATGGTGACTTTGACGACTCTGATGAAGACACGGTGGTCGAGAGAAACGGTGACGCCGAGCCAGCCCATATGCCCGTCAATGAAGCAGTTAACTGCGAagccaaaaaaataaatggctGTGACTCAGCCACTAATGACATTAAATTGCAAGCTAATGTCCTCGAAAGTCAGCCTAAAATGAACGGAGTTAAGAATTACGACAATGGACACAGTAGTGAAGTAGATAGTGTAACATTTGAAAATGGACTATCAGATATGCGAAGGGATTCCCACGGAGAACAAAATCCTTCCATCGTGGGAATATTGGGCGACCAGCAGAATCATGCCGAGCAGCGACTAGCGGCGCgtcgggcggcgcgggcggagGCGCGTGAGATCCGCATGCGCGAGCTGGAGCGGCAACAGCGCGAACAGGAGGACCATGCCGACAAGGCATACGACATGTATGCAGAGACGGTGGGGCGGCGCGGGGGCTCGCGGCTGGCGGCGCTGTCGCCGGGCGTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGTCGACGACAGCTTCAGCCTCAAAGACCTCAGGCACGAGCTCAAAGAGGTTGAAGAgaagttccgcaaagcgatgATCCTGAACGCACAGCTGGACAACGACAAGGCGGCGCTAGGTTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTCCACGAAGAATACGCGCAACTACAACGCGAGCACAAAGAGAAATGTTCAGCACACGAGCGCTTAAAGCGCGAGCACGCGTCGCTGGAACGCGAGCTAAACTCCGCGCGGGACGCAGTACGCGCACGGGACGCGGCCGCGCAGGTCGCCGGGTTCGCGTTCGTGGACGCGCTCAGCAGCGGCGAGGGCGACGGGCCGGCGCTGGCGCTCGTCTCTCATCAGTCCGAGCAGCTGCTCAACGACGCGGGAGAAGGCACGCTCGACGTGCGGTTGCAGAAGCTGCTGGGCTCGAAGCAGGCTTTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTCAACGAAGAACGCACCGCCAGGCAGAACGGCGTAGCCAACCACCACGATATGGAGTACGAGAACGAACTGGAGACGCTCCGCAAGTGCGTGTCGGAGGCGAAGGCCCGCGCGGCGCGCGCCGAGGCCGAGGCGGCGCTGCAGGCCGCCGGCGTGGCGCGCCTCGAGGCGCAGGTGGCGCGCCTAAGGGCCCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTGAAGCAGGAGCGGCGCCGGTTGCAGCGGGAGGCTCGGGAGGCCCTGAATCGCGTGGAAGAGCTGGAGACAGAGAACAGCCACCTGACCAAGCGGCTCGATAAGCTCAAGAACGCCAAGTCAGCGCTGCTAAAGGACCTGTGA
- Protein Sequence
- MGRSSKLATPGNSDEESGDAFTDGDFDDSDEDTVVERNGDAEPAHMPVNEAVNCEAKKINGCDSATNDIKLQANVLESQPKMNGVKNYDNGHSSEVDSVTFENGLSDMRRDSHGEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGSRLAALSPGVHSPRRSSEDSVDDSFSLKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLERELNSARDAVRARDAAAQVAGFAFVDALSSGEGDGPALALVSHQSEQLLNDAGEGTLDVRLQKLLGSKQALESEVRKLKLQLNEERTARQNGVANHHDMEYENELETLRKCVSEAKARAARAEAEAALQAAGVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012005;
- 90% Identity
- iTF_00012005;
- 80% Identity
- -