Zghe009850.1
Basic Information
- Insect
- Zaprionus ghesquierei
- Gene Symbol
- -
- Assembly
- GCA_018904095.1
- Location
- JAEIGP010000676.1:3242247-3245415[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.6e-05 0.0052 17.0 5.0 1 23 169 192 169 192 0.97 2 16 0.0011 0.079 13.3 3.1 1 23 241 264 241 264 0.96 3 16 0.00014 0.0094 16.2 3.4 1 23 331 354 331 354 0.96 4 16 0.0017 0.12 12.8 1.2 2 23 406 427 405 427 0.97 5 16 5.7 3.9e+02 1.7 1.5 1 19 540 558 540 561 0.72 6 16 0.0098 0.67 10.4 0.5 1 23 570 592 570 592 0.96 7 16 0.00025 0.017 15.4 2.1 1 23 599 621 599 622 0.95 8 16 0.0004 0.028 14.7 1.4 2 23 630 651 629 651 0.96 9 16 0.002 0.14 12.6 0.4 3 23 679 699 678 699 0.97 10 16 0.0014 0.094 13.1 1.4 1 23 738 761 738 761 0.96 11 16 9.1 6.3e+02 1.0 1.7 1 21 768 788 768 789 0.91 12 16 0.00078 0.054 13.8 0.9 1 23 798 821 798 821 0.97 13 16 1.4e-05 0.00099 19.3 0.5 1 23 840 863 840 863 0.97 14 16 0.087 5.9 7.4 0.2 1 23 873 895 873 895 0.94 15 16 2.2e-05 0.0015 18.7 3.3 1 23 901 923 901 923 0.99 16 16 4.6e-05 0.0032 17.7 0.9 1 23 929 951 929 951 0.98
Sequence Information
- Coding Sequence
- ATGACAAGGACATGCAGGATCTGCGGTGGTGCAGATGGTCGCTATTGGATTGAGACTCCGGTAGATAAATACTCCGAGAAAACATTTAATCAAATATTCCTAGAGCTAACCAGACTTGAAGTCGTCTTGGATCAAGCTGACAAGTTACCGCCCTGGCTATGCCGCAGCTGTGCCCACCGATTGGAGAATGCCTACGATTTTGTCTTGCAAGCACGTCAAACGCATCAGCTCTGGCTGCAAAAACTTGCCGCCGAAAACGATGCAGAGGACATCGAGCCGGGCACATTAGAATGTCTGCGTGAGATGCCAATACAATTGCTGGAAATAGAGGATATTACAATTAAAATGGAAGAGCCTGAACCAGCACAACAGCCCGTAGATCCAACCAAATCGATTGATCCATTGGTCAAAAAATTAAGGAACAATGAAAGCGACGATGATGATGATGACGATGATGTTCCACTAAAGCAGCGTAAAATGCACCTCCGCAAATTGCCTATGCTACACAAATGTAACAAGTGCGATAAAGCCTTCAAGTACGTTACTAACTTGTTCAGGCACAAGCAGCGAGACCACAGAACGGACGAAACCCAGACTAAGAAAGTATCCGTCAGTCAGAACGAAGGTTCAGAGCCCTCACTTCATAGTATTATTAAAAATTCTATTGCAGCCAGAGGCAGCACTCAGTCAGACTTGGATAGTAACAACAGTGATAATTACTACAAATGCGACCAATGCGATAAGTCGTACAAGTACATAATGCTGCTTATTAAACACAAGCATAAGGCGCACGGCGCCAACCAGTTGCCAGCGGAGCCAAGACCCATTCGAAGAAACGATGAGTCAAGCTCACAATCGACGGATAAGCCGAAAGCAGCACCACCGCAGCGACCTAGAATAACCTGTACAGATTCGTTGGTGCACAGCATCATCAAAGAAATTAAAACACCCGAGGAGGATGAATCGGACAACACAGGAGCAGACAATTATTATAAGTGCGATCAATGTGATAAATCCTTCAAATACATTGTGAGTCTTATTAAGCATAAGCATAAGGAACATAATGCCTACAGAGATTCTGATGACGATGAAGACGAAGCCGCCTTATCCACCTATGCAGCATCTTCGGCTGCGCATTCAAAACCTTCACGCATCGATAGACGTGTCAAAGGCTTTGATTTAAATCGCTGCAAGCCGAATGGCTCCAAAGAGATTCAATGCATGATCTGTCTTCGTAGATTTGTCAAGCTAAGAGAGCTAAGACAGCATCTCAAGAAACACCCACACGACTTCACTTTCGAGGCACATGGCGAGCCGATTGAACGTATTGCCGAAGGCTTCTACAAAACCGCTGTTGAGTCAACAGCCGAAGGCCTCAAACAGCGCATATTCAATGATCTCAAGATTGGCATGTATGGACGCTACTATTCCATAACGAACGAAGCACGATACGAAATGAATTTGGACAGCTCCGACACGGACAGTGATGGCGAAGGAGATGTTGTGGAACGTCGTAGCTATTCCTGCGAGTTGTGCGATGCACCCATTGCTGTATGGCCACGTAAATTTCAGCTACATGAACATCATCGGCAACAACACACTTGGCTAGATGCGCCGTATGTTTGTCAACGTTGTGACTCGCGCTTCCTGAGCGCCCAATTGCTGGATCATCACACGCATAAGCTTTGCCAAAACACACTCAAACGCTTCATGTGCGACAAGTGTCCGCAGCGCTTCTTCTGGCGACGTAATCTGCGTGCACATCTCGCTGAGCACAAAAACAAGCAAGAGACCTATCCATGTGATCAGTGCTCGCGTAGCTTTCAGGACAAGAGTGCCGTCACCAAGCACAAGCTCATGCATCACGATGTCAGCAATGAACTTCTTCCCTGCCGCTGGTGCACGCGCACGTTCTATCGTCCGGCTCTGTTGCACAAGCATGTGCAGCGACACGGTTTCAGGGGCGAAGACCTACCCTTGGCAGAGACTCTGCTGGCAGATGCCGCCAAGCCAACCGGACCAAAGCACATTCTGTGCAAGCTATGTGACATGCAATTCATTAGCATTACCGATCTGCGACGACACATTTCGCTGCATGCGCACAGTGAGGAGGCAGGCAACTATATGATTAGCACCGAGGAAGGCTTTGAGCTGCAATTGGATGAAACAGATGACAGCGATGCTGAAACAGTGGCATCTAACGCAAGGTCTTATAAATGTGATTTGTGTGACATGACCTTTCAACGACGACGCGACATGAGCGAGCATCAATATTCTCTGCACACATTCGACAAATTGCCGTATTCCTGCGAACATTGCATTTTCAAGTCCGTAGACAAGTTAATGCTGGAACATCATAAGCGCTCGCAGTGCCTTAACGAAGAAAAGAAATTCAAGTGTTCGCGGTGCGGTTACAAGTTTATGTGGCGCGTCAATCTGGAACGACATATGGCCAGCCAACATGCCAATTTATCCAATCAGGCTCCGGTGACATCCAAACGGACCAGACGCTTCCGTTATCAGTGCCCGCACTGCTGGAGATCCTTTGTGGTGCAACCTAGCCTGGATAAACACATACGCGACATGCATGTTGCTAAAAAGAATCCGGGGAAAAAGTATCTTTGCTCGCTGTGCGGCCTAGAGTCTCTCACGCCTAACAAGCTAAGCATTCACATGCGCCGTCACAACGGCGAAAAGCCCTTCAAATGCGATCTCTGCGACATGTCCTTTACAGTCCACTACGAGCTAAAGGTGCATCGTCGCAAACATACCGGGGAGCGTCCCTATCAGTGCACGTTTTGTGCTAAGGATTTTGCCCGGCCTGATAAGCTGAGGCGACATGTCTATATGCATAGCGTAAAGCGTTAA
- Protein Sequence
- MTRTCRICGGADGRYWIETPVDKYSEKTFNQIFLELTRLEVVLDQADKLPPWLCRSCAHRLENAYDFVLQARQTHQLWLQKLAAENDAEDIEPGTLECLREMPIQLLEIEDITIKMEEPEPAQQPVDPTKSIDPLVKKLRNNESDDDDDDDDVPLKQRKMHLRKLPMLHKCNKCDKAFKYVTNLFRHKQRDHRTDETQTKKVSVSQNEGSEPSLHSIIKNSIAARGSTQSDLDSNNSDNYYKCDQCDKSYKYIMLLIKHKHKAHGANQLPAEPRPIRRNDESSSQSTDKPKAAPPQRPRITCTDSLVHSIIKEIKTPEEDESDNTGADNYYKCDQCDKSFKYIVSLIKHKHKEHNAYRDSDDDEDEAALSTYAASSAAHSKPSRIDRRVKGFDLNRCKPNGSKEIQCMICLRRFVKLRELRQHLKKHPHDFTFEAHGEPIERIAEGFYKTAVESTAEGLKQRIFNDLKIGMYGRYYSITNEARYEMNLDSSDTDSDGEGDVVERRSYSCELCDAPIAVWPRKFQLHEHHRQQHTWLDAPYVCQRCDSRFLSAQLLDHHTHKLCQNTLKRFMCDKCPQRFFWRRNLRAHLAEHKNKQETYPCDQCSRSFQDKSAVTKHKLMHHDVSNELLPCRWCTRTFYRPALLHKHVQRHGFRGEDLPLAETLLADAAKPTGPKHILCKLCDMQFISITDLRRHISLHAHSEEAGNYMISTEEGFELQLDETDDSDAETVASNARSYKCDLCDMTFQRRRDMSEHQYSLHTFDKLPYSCEHCIFKSVDKLMLEHHKRSQCLNEEKKFKCSRCGYKFMWRVNLERHMASQHANLSNQAPVTSKRTRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01552612; iTF_01550434; iTF_01555568; iTF_01557012; iTF_01551899; iTF_01558459; iTF_01559941; iTF_01559206; iTF_01551165; iTF_01554879; iTF_01549024; iTF_01554135; iTF_01557724; iTF_01549741;
- 90% Identity
- iTF_01550434;
- 80% Identity
- -