Zbog003576.1
Basic Information
- Insect
- Zaprionus bogoriensis
- Gene Symbol
- -
- Assembly
- GCA_035046045.1
- Location
- JAWNOI010000043.1:108761-111927[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.4e-05 0.0053 17.0 4.5 1 23 171 194 171 194 0.97 2 15 0.0012 0.077 13.3 3.1 1 23 242 265 242 265 0.96 3 15 0.0006 0.038 14.3 3.3 1 23 330 353 330 353 0.96 4 15 0.0064 0.41 11.0 0.4 2 23 405 426 404 426 0.96 5 15 2.2 1.4e+02 3.1 1.3 1 19 539 557 539 560 0.76 6 15 0.019 1.2 9.6 0.6 1 23 569 591 569 591 0.94 7 15 7.9e-05 0.005 17.0 1.4 1 23 598 620 598 621 0.95 8 15 0.00039 0.025 14.9 1.1 2 23 629 650 628 650 0.96 9 15 0.0034 0.22 11.9 0.4 3 21 678 696 677 700 0.91 10 15 0.011 0.71 10.3 1.4 1 23 737 760 737 760 0.96 11 15 0.0012 0.078 13.3 0.8 1 23 797 820 797 820 0.97 12 15 1.5e-05 0.00096 19.3 0.5 1 23 839 862 839 862 0.97 13 15 0.092 5.8 7.4 0.2 1 23 872 894 872 894 0.94 14 15 2.3e-05 0.0015 18.7 3.3 1 23 900 922 900 922 0.99 15 15 4.9e-05 0.0031 17.7 0.9 1 23 928 950 928 950 0.98
Sequence Information
- Coding Sequence
- ATGACAAGAACTTGTCGGATCTGCGGAGGCGCAGATGGCCGCTATTGGATCGAGACACCAGTCGATAAATACGCGGAGAAAACATTTAATCAAATGCTGATAGAGCTTACTAGACTTGAAGTCGTTTTGGATCAAGCTGACAAGCTGCCGCCCTGGCTGTGTCGCAGTTGCGCACACAGATTGGAGAATGCCTACGACTTTGTCCTGCAGGCACGGCAAACCCATCAGCTTTGGCTGCAGAAACTCGCTAACGAAGGCGAAGCCGAAGACGTCGAGCCGGGGACATTGGAATGCCTACGTGAGATGCCTATACAACTTCTGGAAATTGAGGGCATCACAATTAAAATGGAGGAGCAATCAGACCCTGTCCCGCCACCAGTTGGCCTAACTATGTCGGTCGATCCGCTggtcaaaaaaattattggtaACGAAAACGAAGACGccgaagatgatgatgatgatgtgccGCTGAAGCAACGTAAGACACACTCGAAGAAGCTACCAATGCTGCATAAATGCGACAAATGTGACAAGGCCTTCAAGTATGTAACCAACTTGTTCAGGCATAAGCAGCGCGATCACAAGCCTGAACAAAGTCTGTCAAAGGAGGCATCCGTCAACCAGACTGACCGACCGGAGCCATTACTACAGAGTATTATCAAGAGTTCCATTGTAACCAGGGGCAGCACTCAATCCGAATTGGACAGTGCCGATGATAACTACTACAAGTGCGATCAGTGCGACAAGTCGTATAAGTACATCATGCTTCTCatcaagcacaagcacaaggcGCATGGCGCCAATCAGATTCCCGTGGAGCCAAGACCAATTCGTAGAAGTGATGCGTCGGCCACTGAAACCACTGAAATGGCAGCACCTCTACAGCGTTCAAGGCTGACCTGCACAGACTCTTTAGTGCACAGCATAATAAAGGCGATTAAAACTCCCGAGGAGGACGAGGCAGAGTGCACAGGCTCAGATAATTACTATAAGTGCGATCAATGTGATAAGTCCTACAAGTATATTGTCAGTCTTAtaaaacacaagcacaaggAGCACAGTTCTTACAGGGATTCCGATGGGGACGAAGACGAAGCCACGTCATTAGCGTCTGCAACAGCCACAGCTTCAAATTCCAAGCCCTCACGCATCGACAGACGCGTTAAGGGCTTCGACTTGAATCGCTGTAAGCCCAATGGCTTCAAGGAGATTCAGTGCATGATCTGTCTGCGCAGATTTGTCAAGCTTAGAGAACTGCGTGATCATCTCAAGGCGCACCCCCTCGACTTTACGTTTGAGGCACACGGCGAGCCCATCGAACGCATTGCTGAAGGTTTTTATAAGACCGCCGTAGAGTCGACAGCGGAAGGCTTGAAACAGCGCATTTTTAATGATCTCAAGGTTGGAATGTACGGGCGCTACTACTCCATAACAAACGAAGCGCGCTATGAAATGAATATGGACAGCTCCGATACAGACAGCGACGGCGAAGCGGATGTTGTGCAGCGTCGCAGTTATGCCTGTGAGCTATGCGATTCACCCCTAGCCGTGTGGCCACGCAAGTTCCAGCTGCACGAACACCATCGACAGCAACACACCTGGGCAGACGCTCCGTATGTTTGCCAGCGGTGCGACTCTCGTTTTTTGAGCGCCCAGCTGCTAGCTCACCATACACACAAGCTCTGCCAGAACACTCTGAAACGCTTCATGTGCGACAAATGTCCACAGCGCTTCTTCTGGAGGCGCAATCTACGCGCCCATCTCGTCGAACACAAGAACAAGCAAGAGACCTATCCTTGTGATCAATGCCCGCGTAGTTTTCAGGACAAGAGCGCTGTGACCAAGCACAAGCTCATGCATCACGATGTCAGTAATGAACTGATACCCTGCCGCTGGTGCACACGAACATTTTACCGCCCGGCGCTGCTGCATAAGCATGTGCAGCGACACGGCTTCACAGGCGAGGACTTGCCTTTGGCGGAGACTCTGCTGGCAGATGCCGCCAAGCCGGCCGGATCCAAAAACATATTGTGTAAGTTGTGCGACACGCACTTTGTTAGTATCGCCGATTTGCGGCGACACATTTCACTTTATGCGCACAGTGCGGAGGCATGCAACTATATGATAAGTACGGAAGAAGGCTTTGAGTTAGAGCTTGAAGAAACAGACGACAGCGACGATGAGACCACGGTATCTGCTGCCAGATCCTATACGTGTGAACTGTGCAATATGAATTTCCAGCGTCGGCGAGACATGAGTGAGCATCAGTATTCCCTGCACACTTTCGATAAGCTGCCGTTCTCCTGCGATCACTGCATATTCAAGACAGTGGACAAGACGATGCTGGAGCATCATAAGCGCAATCAATGCCACAATCAAGATAAAAAATTCGAGTGTTCGCGCTGTGGCTACAAGTTTATGTGGCGCGTGAACCTGGAGCGACACATGTCTAGCCAACACACGAAGTCATCCAATCAGGCTCCAATTGCAGCCAAGAGGAGCAGGCGTTTTCGATACCAATGCCCCCACTGCTGGAGATCGTTTGTGGTGCAGCCCAGCCTTGACAAGCACATACGCGACATGCATGTCGCCAAAAAGAATCCGGGCAAGAAATATCTCTGCTCCCTGTGCGGCCTGGAATCGCTCACGCCCAACAAGCTCAGCATACACATGCGTCGACACAACGGCGAAAAGCCTTTCAAGTGCGATCTCTGCGACATGTCCTTCACAGTACACTACGAACTGAAGGTACATCGTCGCAAGCATACGGGTGAGCGTCCCTATCAGTGTACGTTTTGTGCCAAGGATTTCGCTCGGCCGGATAAACTTAGGCGACATGTATACATGCATAGTGTTAAGCgttaa
- Protein Sequence
- MTRTCRICGGADGRYWIETPVDKYAEKTFNQMLIELTRLEVVLDQADKLPPWLCRSCAHRLENAYDFVLQARQTHQLWLQKLANEGEAEDVEPGTLECLREMPIQLLEIEGITIKMEEQSDPVPPPVGLTMSVDPLVKKIIGNENEDAEDDDDDVPLKQRKTHSKKLPMLHKCDKCDKAFKYVTNLFRHKQRDHKPEQSLSKEASVNQTDRPEPLLQSIIKSSIVTRGSTQSELDSADDNYYKCDQCDKSYKYIMLLIKHKHKAHGANQIPVEPRPIRRSDASATETTEMAAPLQRSRLTCTDSLVHSIIKAIKTPEEDEAECTGSDNYYKCDQCDKSYKYIVSLIKHKHKEHSSYRDSDGDEDEATSLASATATASNSKPSRIDRRVKGFDLNRCKPNGFKEIQCMICLRRFVKLRELRDHLKAHPLDFTFEAHGEPIERIAEGFYKTAVESTAEGLKQRIFNDLKVGMYGRYYSITNEARYEMNMDSSDTDSDGEADVVQRRSYACELCDSPLAVWPRKFQLHEHHRQQHTWADAPYVCQRCDSRFLSAQLLAHHTHKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQETYPCDQCPRSFQDKSAVTKHKLMHHDVSNELIPCRWCTRTFYRPALLHKHVQRHGFTGEDLPLAETLLADAAKPAGSKNILCKLCDTHFVSIADLRRHISLYAHSAEACNYMISTEEGFELELEETDDSDDETTVSAARSYTCELCNMNFQRRRDMSEHQYSLHTFDKLPFSCDHCIFKTVDKTMLEHHKRNQCHNQDKKFECSRCGYKFMWRVNLERHMSSQHTKSSNQAPIAAKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01553397;
- 90% Identity
- -
- 80% Identity
- -