Zorn006678.1
Basic Information
- Insect
- Zaprionus ornatus
- Gene Symbol
- -
- Assembly
- GCA_018904035.1
- Location
- JAEIFZ010000115.1:15481172-15484347[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0012 0.095 13.2 0.4 4 23 124 144 124 144 0.95 2 16 0.001 0.081 13.4 3.1 1 23 193 216 193 216 0.96 3 16 0.0028 0.22 12.0 4.1 1 23 283 306 283 306 0.96 4 16 0.0072 0.55 10.8 0.3 2 23 358 379 357 379 0.96 5 16 5.2 4e+02 1.8 1.5 1 19 492 510 492 513 0.72 6 16 0.021 1.6 9.3 0.6 1 23 522 544 522 544 0.93 7 16 0.00023 0.018 15.5 2.1 1 23 551 573 551 574 0.95 8 16 0.00034 0.026 14.9 1.1 2 23 582 603 581 603 0.96 9 16 0.0016 0.12 12.8 0.2 3 23 631 651 630 651 0.97 10 16 0.0011 0.081 13.4 1.3 1 23 690 713 690 713 0.96 11 16 0.75 58 4.4 1.3 1 22 720 741 720 741 0.95 12 16 0.00071 0.055 13.9 0.9 1 23 750 773 750 773 0.97 13 16 1.3e-05 0.001 19.4 0.5 1 23 792 815 792 815 0.97 14 16 0.079 6.1 7.5 0.2 1 23 825 847 825 847 0.94 15 16 2e-05 0.0015 18.8 3.3 1 23 853 875 853 875 0.99 16 16 4.2e-05 0.0033 17.8 0.9 1 23 881 903 881 903 0.98
Sequence Information
- Coding Sequence
- ATGACAAGAACATGTAGGATCTGTGGAGGCGCTGATGGGCGCTTTTGGATCGAGACTCCTGTAGATAAATACTCCGAGAAAACATTTAATCAAATATTGTTAGAGCTAACCAGACTTGAAGTCGTCTTGGATCAAGCTGACAAGTTACCGCCCTGGCTATGTCGCAGCTGTGCTCACCGTTTGGAGAATGCCTATGATTTTGTCTTGCAAGCCCGTCAAACCCATCAGCTCTGGCTGCAAAAGCTTTCAGCCGAAAATAATACGGAGGACATCGAGCCGGGAACATTGGAATGTCTCCGTGAGATACCAATACAGCTGCTGGAACTAGAGGGTATCACAATCAAAATGGAAGAGCCTGAACCAGCACAACCCAAGTGCGACAAAGCCTTCAAGTACGTTACTAATTTGTTCAGGCACAAACAGCGCGTCCACAGAAATGACGAAGCGCAGGATAAGAAAACCCTCCTCTGTCGAACCGATCAATCAGAGCCATTACTTCAAAGTTTTATTAAGAGTTCAATTGCAGCCAAAGGCAGTATACAGTCGGATTTGGACAGCAGCAACAGTGATAACTACTACAAATGCGACCAGTGCGATAAGTCGTATAAGTACATAATGCTGTTAATTAAACACAAGCACAAGGCGCATGGTGCCAACCAGTTGCCTGCGGAGCCAAGACCAATCCGAAGAAACGATGAATCAGGCTCGCAGCCGACGGGTAAGCCGAAACTCGGAGCACCGCCAAGATCCAGGACAACCTGTACAGATTCTTTGGTGCACAGCATTATCAAAGAGATAAAAACACCTGAAGAGGACGAGACGGACACCACAGGAGCAGACAATTATTATAAGTGCGATCAATGTGATAAATCCTACAAGTACATCGTGAGTTTTATCAAGCATAAGCACAAGGAACACAATGCCTACAGAGATTCCGATGAGGAGGAAGACGAAGCCGTGATGTCCACCTATGCAACGCCTGTGGTTAGCCATTCAAAACCTTCACGCATTGATAGACGTGTCAAAAGCTTCGATTTACATCGCTGCAAACCGAATGGCTCTAAAGAGATTCAATGCATGATCTGTCTTCGTAGATTTGTCAAGTTAAGAGAGCTGCGAGAGCATCTCCAGGCACACCCACACGAATTCACATTTGATGCACATGGTGAACCAATTGAACGTATTGCCGAGGGTTTCTATAAAACCGCTGTGGAGTCAACGGCCGAGGGCCTAAAACAGCGCATATTCAATGATCTCAAGATAGGCATGTACGGACGTTATTATTCAATAACGAACGAAGCACGATACGAAATGAATTTGGACAGCTCCGATACGGATAGCGATGGCGAGGGAGATGTTGTGGAACGTCGTAGTTATGCCTGCGAGCTGTGCGATTCATCCACTGCCGTATGGCCTCGTAAATTTCAGCTACACGAACATCATCGTCAACAGCACACTTGGTTAGAGGCACCGTATGTTTGCCAGCGATGTGACTCTCGTTTCCTGAGTGCCCAATTGCTAGATCACCATACGCACAAGCTGTGTCAGAACACACTTAAGCGGTTTATGTGCGACAAGTGTCCACAGCGTTTCTTCTGGCGGCGTAATCTACGCGCACATCTCGTTGATCACAAGAACAAGCAAGAAACCTATCCATGTGACCAGTGCTCGCGCAGTTTTCAGGATAAGAGTGCTGTCACAAAGCACAAACTGATGCATCACGATGTCAGTAACGAACTCATTCCCTGCCGCTGGTGCACACGAACGTTCTATCGCCCTGCGCTGCTGCACAAGCATGTACAACGACATGGTTTCAAAGGTGAAGACCTACCCCTGGCGGAGACTCTGCTGGCAGATGCGGCCAAGCCAATCGGACCAAAGAACATCCTGTGCAAGCTATGTGATATGCAATTCATTAGCATTGCCGATCTACGTCGACACATTTCATTGCATGCGCACAGCGAGGAGGCAGGCAACTATATGATCAGCACGGAGGAAGGCTTTGAGTTGGACTTGGATGAAACAGATGACAGCGAGGATGAAACTGTCGTATCTAACAGCAGGTCTTACAAGTGCGATTTGTGTGATATGTCATTTCAGCGCAGACGTGATATGAGCGAGCATCAATATTCTCTGCACACGTTCGACAAGCTGCCGTACTCCTGCGATCATTGCATTTTTAAGTCCGTAGACAAGTTAATGCTGGAGCATCATATGCGCTCACAGTGTCTCAATCAAGAGAAGAAATTCAAGTGTTCACGTTGCGGTTACAAATTTATGTGGCGCGTCAATCTTGAGCGACATATGGCTAGTCAACATGCGAAATCATCCAATACGGCGCCAGTAACCTCAAAGAGGAGCAGACGTTTTCGATATCAGTGCCCGCATTGCTGGCGATCCTTTGTGGTGCAACCGAGCCTGGACAAGCATATACGCGACATGCATGTTGCTAAAAAGAATCCGGGCAAGAAGTATCTCTGTTCGCTTTGCGGCCTGGAGTCGCTTACGCCGAACAAGCTTAGCATTCACATGCGTCGTCACAACGGCGAAAAGCCATTTAAATGCGATCTGTGTGACATGTCCTTTACTGTGCACTACGAGCTTAAGGTTCATCGTCGCAAGCATACCGGGGAACGTCCTTATCAGTGTACGTTCTGTGCCAAGGACTTCGCACGGCCCGATAAACTGAGGCGTCATGTCTATATGCATAGCGTTAAGCGCTAA
- Protein Sequence
- MTRTCRICGGADGRFWIETPVDKYSEKTFNQILLELTRLEVVLDQADKLPPWLCRSCAHRLENAYDFVLQARQTHQLWLQKLSAENNTEDIEPGTLECLREIPIQLLELEGITIKMEEPEPAQPKCDKAFKYVTNLFRHKQRVHRNDEAQDKKTLLCRTDQSEPLLQSFIKSSIAAKGSIQSDLDSSNSDNYYKCDQCDKSYKYIMLLIKHKHKAHGANQLPAEPRPIRRNDESGSQPTGKPKLGAPPRSRTTCTDSLVHSIIKEIKTPEEDETDTTGADNYYKCDQCDKSYKYIVSFIKHKHKEHNAYRDSDEEEDEAVMSTYATPVVSHSKPSRIDRRVKSFDLHRCKPNGSKEIQCMICLRRFVKLRELREHLQAHPHEFTFDAHGEPIERIAEGFYKTAVESTAEGLKQRIFNDLKIGMYGRYYSITNEARYEMNLDSSDTDSDGEGDVVERRSYACELCDSSTAVWPRKFQLHEHHRQQHTWLEAPYVCQRCDSRFLSAQLLDHHTHKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVDHKNKQETYPCDQCSRSFQDKSAVTKHKLMHHDVSNELIPCRWCTRTFYRPALLHKHVQRHGFKGEDLPLAETLLADAAKPIGPKNILCKLCDMQFISIADLRRHISLHAHSEEAGNYMISTEEGFELDLDETDDSEDETVVSNSRSYKCDLCDMSFQRRRDMSEHQYSLHTFDKLPYSCDHCIFKSVDKLMLEHHMRSQCLNQEKKFKCSRCGYKFMWRVNLERHMASQHAKSSNTAPVTSKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01553397;
- 90% Identity
- -
- 80% Identity
- -