Znig004317.1
Basic Information
- Insect
- Zaprionus nigranus
- Gene Symbol
- -
- Assembly
- GCA_018903425.1
- Location
- JAEIGD010000001.1:8007277-8010428[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00011 0.0098 16.5 5.0 1 23 171 194 171 194 0.97 2 16 0.0011 0.1 13.3 3.1 1 23 239 262 239 262 0.96 3 16 0.00055 0.05 14.3 3.3 1 23 329 352 329 352 0.96 4 16 0.0057 0.52 11.1 0.4 2 23 404 425 403 425 0.96 5 16 5.6 5e+02 1.7 1.5 1 19 538 556 538 559 0.72 6 16 0.022 2 9.3 0.6 1 23 568 590 568 590 0.93 7 16 0.00025 0.022 15.4 2.1 1 23 597 619 597 620 0.95 8 16 0.00036 0.033 14.9 1.1 2 23 628 649 627 649 0.96 9 16 0.00086 0.077 13.7 0.1 3 23 677 697 676 697 0.98 10 16 0.0011 0.1 13.3 1.3 1 23 736 759 736 759 0.96 11 16 4.9 4.4e+02 1.9 1.6 1 21 766 786 766 787 0.93 12 16 0.0021 0.19 12.5 0.8 1 23 796 819 796 819 0.97 13 16 0.07 6.3 7.7 0.6 1 11 838 848 838 849 0.92 14 16 0.084 7.6 7.4 0.2 1 23 850 872 850 872 0.94 15 16 2.1e-05 0.0019 18.8 3.3 1 23 878 900 878 900 0.99 16 16 4.5e-05 0.0041 17.7 0.9 1 23 906 928 906 928 0.98
Sequence Information
- Coding Sequence
- ATGACAAGAACATGTAGGATCTGTGGAGGCGCTGATGGGCGCTATTGGATCGAGACTCCTGTAGATAAATATTCCGAGAAAACATTTAATCAAATATTGCTAGAGCTAACCAGACTTGAAGTCGTCTTGGATCAAGCTGACAAGTTACCACCCTGGCTATGTCGTAGCTGTGCTCACCGGTTGGAGAACGCCTATGATTTTGTCTTGCAAGCCCGTCAAACTCATCAGCTCTGGTTGCAAAAGCTTTCAGCCGAAAATGATGCAGAGGACATCGAGCCGGGCACATTGGAATGCCTGCGTGAGATGCCAATACAATTGCTGGAAATAGAGGGTATCACAATCAAAATGGAAGAGCCTGAACCAACACAACCGCCACTAGATCCAACTACGTCGATTGATCCATTAGTTAAAAAAATTAGGAGTACTGAGAGTGGCGATGATGATGATGATGACGATGATGATGTGCCGCTAAAGCAGCGCAAAACTCACTCCAGAAAACTGCCAATGCTGCACAAATGTAGCAAGTGCGACAAGGCCTTCAAGTACGTTACTAATTTGTTCAGGCACAAACAGCGCGACCACAGAAATGACGAATCACCGACTAAGAAAACCCCCGATCATGCAGAGCCATTACTTCAAAATATTATTAAGAGTTCAATTGCAGCCAGAGGCAGCACACAGTCTGATTTGGATAGCAGCAACAGTGATAACTACTACAAGTGCGACCAGTGCGATAAGTCGTATAAGTACATAATGCTGCTAATTAAGCATAAGCACAAGGCGCACGGGGCAAACCAGTTGCCTGCGGAGCCAAGATTAATCCGCAGAAACGATGAGTCGGGCTCACAGGCTACGGGTAAGCCGAGAGCAGCAGCACCAGCTCGCTCCAGGCCCACCTGTACAGATTCTTTGGTGCACAGCATTATCAAAGAGATCAAAACACCTGAGGAGGACGAGGCGGACACCACAGGAGCAGACAATTATTATAAGTGTGATCAATGTGATAAATCCTACAAGTACATCGTGAGTCTCATCAAGCATAAGCACAAGGAACACAATGCCTACAGAGATTCCGATGAGGAGGAAGACGAAGCCGCCTTGTCCACTTATGCCACGTCTGTGGGTAGCCATTCAAAACCTTCACGCATCGATAGACGTGTCAAAAGCTTCGACTTACATCGCTGCAAACCGAATGGCTCCAAAGAGATTCAATGCATGATCTGTCTACGTAGATTTGTCAAGCTAAGAGAGCTGCGAGAGCATCTGAAGGCACACCCACACGACTTCACATTCGATGCACATGGCGAACCAATCGAACGTATTGCCGAAGGCTTCTATAAAACCGCAGTGGAGTCAACGGCCGAGGGCCTGAAACAGCGCATATTCAATGATCTCAAGATTGGCATGTACGGACGATACTATTCAATAACGAACGAAGCACGATACGAAATGAATCTGGACAGCTCCGATACGGATAGCGATGGCGAGGGAGATGTTGTGGAACGTCGTAGTTATGCCTGCGAGCTGTGCGACTCACCCACTGCCGTATGGCCTCGTAAATTCCAGCTACACGAACATCATCGTCAACAGCACACTTGGTTAGAGGCACCGTATGTTTGCCAGCGATGCGACTCTCGTTTCCTGAGTGCTCAGTTGCTGGATCACCATACACACAAGCTCTGTCAGAACACACTCAAGCGATTCATGTGCGACAAGTGTCCACAGCGCTTCTTCTGGCGGCGTAATCTACGTGCACATCTCGTTGATCACAAAAACAAGCAAGACACCTATCCATGTGATCAGTGCTCGCGCAGTTTTCAGGATAAGAGTGCCGTCACAAAGCACAAGCTGATGCATCACGATGTCAGCAACGAACTCATTCCCTGCCGCTGGTGCACACGGACGTTCTATCGGCCTGCGCTGCTGCACAAGCATGTACAGCGACACGGCTTCAAAGGCGAAGACCTACCACTGGCGGAGACTCTGCTGGCAGATGCCGCCAAGCCAACTGGACCAAAGAATATTCTGTGCAAGCTATGTGATATGCAATTCATTAGCATTGCCGATCTGCGACGACACATTTCAGTGCATGCGCACAGCGAGGAGGCTGGCAACTATATGATAAGCACAGAGGAAGGCTTTGAGCTCGACTTGGATGAAACCGATGACAGCGAGGACGAAACTGTCGCATCTAACGGCAGGTCCTATAAGTGCGATTTGTGTGATATGTCCTTTCAGCGCAGACGCGACATGAGCGAGCATCAATATTCCCTGCACACGTTCGACAAGCTGCCCTACTCCTGCGAGCATTGCATTTTCAAGTCCGTAGACAAGTTAATGCTGGAGCATCATAGGCGCTCACAGTGCCTCAATCAAGAGAAGAAATTCAAGTGTTCACGTTGCGGCTACAAATTTATGTGGCGCGTCAATCTTGAACAACATATGGCAAGTCAACATGCGAAATCATCCAATCCGGCTCCAGTGGCCTCCAAAAGGAGCAGACGTTTTCGATACCAATGCCCCCATTGCTGGCGGTCCTTTGTGAAGTATCTCTGTTCGCTTTGCGGCCTGGAGTCGCTGACGCCCAACAAACTTAGCATTCACATGCGTCGCCATAACGGCGAAAAGCCATTCAAATGCGATCTGTGCGACATGTCATTCACTGTGCACTACGAGCTGAAGGTTCATCGTCGCAAGCATACCGGGGAACGTCCTTATCAGTGTACGTTCTGTGCCAAGGATTTCGCACGGCCCGATAAACTCAGGCGTCATGTCTATATGCATAGCGTTAAGCGCTAA
- Protein Sequence
- MTRTCRICGGADGRYWIETPVDKYSEKTFNQILLELTRLEVVLDQADKLPPWLCRSCAHRLENAYDFVLQARQTHQLWLQKLSAENDAEDIEPGTLECLREMPIQLLEIEGITIKMEEPEPTQPPLDPTTSIDPLVKKIRSTESGDDDDDDDDDVPLKQRKTHSRKLPMLHKCSKCDKAFKYVTNLFRHKQRDHRNDESPTKKTPDHAEPLLQNIIKSSIAARGSTQSDLDSSNSDNYYKCDQCDKSYKYIMLLIKHKHKAHGANQLPAEPRLIRRNDESGSQATGKPRAAAPARSRPTCTDSLVHSIIKEIKTPEEDEADTTGADNYYKCDQCDKSYKYIVSLIKHKHKEHNAYRDSDEEEDEAALSTYATSVGSHSKPSRIDRRVKSFDLHRCKPNGSKEIQCMICLRRFVKLRELREHLKAHPHDFTFDAHGEPIERIAEGFYKTAVESTAEGLKQRIFNDLKIGMYGRYYSITNEARYEMNLDSSDTDSDGEGDVVERRSYACELCDSPTAVWPRKFQLHEHHRQQHTWLEAPYVCQRCDSRFLSAQLLDHHTHKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVDHKNKQDTYPCDQCSRSFQDKSAVTKHKLMHHDVSNELIPCRWCTRTFYRPALLHKHVQRHGFKGEDLPLAETLLADAAKPTGPKNILCKLCDMQFISIADLRRHISVHAHSEEAGNYMISTEEGFELDLDETDDSEDETVASNGRSYKCDLCDMSFQRRRDMSEHQYSLHTFDKLPYSCEHCIFKSVDKLMLEHHRRSQCLNQEKKFKCSRCGYKFMWRVNLEQHMASQHAKSSNPAPVASKRSRRFRYQCPHCWRSFVKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01553397;
- 90% Identity
- iTF_01550434;
- 80% Identity
- -