Xrho002952.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestia rhomboidea
Gene Symbol
-
Assembly
GCA_963853795.1
Location
OY970757.1:13016865-13024832[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00034 0.035 15.6 0.1 2 23 205 227 204 227 0.92
2 12 2.5 2.6e+02 3.4 0.3 6 23 237 254 235 254 0.92
3 12 0.035 3.6 9.3 5.3 1 19 289 307 289 312 0.93
4 12 1.8 1.8e+02 3.9 0.3 5 23 321 339 319 339 0.94
5 12 0.0011 0.11 14.1 0.5 2 23 346 367 345 367 0.96
6 12 6.9e-05 0.007 17.8 2.4 1 23 375 397 375 397 0.97
7 12 0.00016 0.016 16.7 0.9 1 23 406 429 406 429 0.98
8 12 0.00026 0.026 16.0 0.2 1 23 435 457 435 457 0.97
9 12 1.3e-06 0.00013 23.2 2.7 1 23 463 485 463 485 0.98
10 12 0.00044 0.045 15.3 1.0 1 23 490 512 490 512 0.98
11 12 3.4e-06 0.00035 21.9 4.2 1 23 518 540 518 540 0.97
12 12 0.00016 0.016 16.7 2.9 2 23 547 569 546 569 0.95

Sequence Information

Coding Sequence
ATGGCTATGAGCGTGAAAGATTTGTGTAGATTATGCGCCAAGAAAGACGAGTTTTCAAAAGATCTATTGGATGAAAGTaatagaaatgttttaaaactactacaggatttcatacaaattatcATCTTTGAGAATGACACTTTGCCAACGAAGATTTGTTTgaattgtgaagaaaaaatggTGTCATTCCAACTATTTGTTCTAGAATGCTATAAGGTCCAAGATACACTGAAAAAGATgtatgatgataattatgattctCTTGACATCAAGCTTGAACATACGCAGGCAGCTGACGATTTTAATGTCCCAATAAAATCTGAGgTAAAAGATGAAGTAACTGCAGATGATATAGTTTGTGCATTGAATAATGAGGCTACTTTATCGGTGATTGACGTTTTCCCTGAAACCCATAGTGATCATGATGACACTGATATTCACAATGGTGATGATGTTGACGACGACAATGACTATCTTGATGATATAGCTATAGCAGCATTGAAGCCTAAACGTAAACGCATCAGAAGAAAGGAAATAACAGAAAAAGAGGCTGAAGAGTTTAACCAAATGCTCAAAAGGCCCAATTTGAAAGTAAAGGATTTTGTCAAATTGCAGTGTGACATCTGTGGAGAGAAACTGAAGACATGGAGTGGGTTACGTGTACACAGTGCAAAAGTACATAAGAGTGAACCAAATGTTTACTGCCTGTGTGGCTTCGCTGTAAGATCTAAAAGTGTTCTTTACAAACATGTATCGGACCATAAGCTAGAAAGTAGAAAATTAAGAAAGAATTCAGAGGAATCGGACGATGaagaaaaacaaagttttaaatATGCAAGTTTGAATGTTAAAGATTTTATAAGGTTTTTATGTCCCCATTGTGACAAGGAGTGTTCGAGTTGGTACAGACTGAAGGCACATTGTGAGTTTGCTCACAAAATGTCGCCAGTTGTGTCTTGTATCTGTGGTATCACTCTCAAATCCAAGTCAGTTATGTACAAGCATGTACAAGACCATAGGAATCCCAATGTATTGTCATGTGACAAATGTCCCCGAATAACGAAAACCCTAGCtgctttaaataaacataagaTGAGACATATACCGAAATCAGAGAGAAAGTTCTGTTGTGCTAcatgtgaaaaaatatttacttctaAGGATGCTTTGAAATCACACGAAAGATCACATATACCGATAGAGGATCGTAAAATATATCGCTGTGATATGTGTAACATGAAATTCACGACCCGGTCGTCGGCGGCGTCGCACAAGCGCGTGGTGCACGACAAGATCAAGGGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTCTGCCGGAAGTGCTCCAAACCTTTCAAGACCTATTCGAACCTGAAGACGCACATGGACACTCACGAGGACACCTCGTACGAGTGCTACATTTGCAGACGGGTGTTGAACAGTCGGCGCACGCTCCGCAAACATCTGCTCGTTCACGAAGACAAGTGCAGGCATGTCTGCTCTTACTGCAACAAGGCGTTCAAGAGGAGACAGACTTTAAAGGTGCACATGTACACCCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGTCACCCCGACAAGATGGCCGCGCAAGCGCACGGCACCTACCCCAACTACGACATGCAAGGGaaTTTCATGAAGAATGACGTGGCGCCTATAAATGTTCCAGTCGCAAAGAACGAAGTTGAGGCTATGTAA
Protein Sequence
MAMSVKDLCRLCAKKDEFSKDLLDESNRNVLKLLQDFIQIIIFENDTLPTKICLNCEEKMVSFQLFVLECYKVQDTLKKMYDDNYDSLDIKLEHTQAADDFNVPIKSEVKDEVTADDIVCALNNEATLSVIDVFPETHSDHDDTDIHNGDDVDDDNDYLDDIAIAALKPKRKRIRRKEITEKEAEEFNQMLKRPNLKVKDFVKLQCDICGEKLKTWSGLRVHSAKVHKSEPNVYCLCGFAVRSKSVLYKHVSDHKLESRKLRKNSEESDDEEKQSFKYASLNVKDFIRFLCPHCDKECSSWYRLKAHCEFAHKMSPVVSCICGITLKSKSVMYKHVQDHRNPNVLSCDKCPRITKTLAALNKHKMRHIPKSERKFCCATCEKIFTSKDALKSHERSHIPIEDRKIYRCDMCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAAQAHGTYPNYDMQGNFMKNDVAPINVPVAKNEVEAM