Cvac014636.1
Basic Information
- Insect
- Conistra vaccinii
- Gene Symbol
- -
- Assembly
- GCA_948150665.1
- Location
- OX411316.1:13978034-13985187[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00012 0.0093 16.9 0.3 2 23 203 225 202 225 0.95 2 12 2.3 1.8e+02 3.4 0.3 6 23 235 252 233 252 0.92 3 12 0.0014 0.11 13.6 2.6 1 23 287 310 287 310 0.88 4 12 1.6 1.2e+02 3.9 0.3 5 23 319 337 317 337 0.94 5 12 0.00095 0.076 14.1 1.1 2 23 344 365 343 365 0.97 6 12 5.1e-05 0.0041 18.1 2.3 1 23 373 395 373 395 0.97 7 12 0.00014 0.011 16.7 0.9 1 23 404 427 404 427 0.98 8 12 0.00023 0.018 16.0 0.2 1 23 433 455 433 455 0.97 9 12 1.8e-06 0.00015 22.6 4.3 1 23 461 483 461 483 0.98 10 12 0.00039 0.032 15.3 1.0 1 23 488 510 488 510 0.98 11 12 3e-06 0.00024 21.9 4.2 1 23 516 538 516 538 0.97 12 12 0.00014 0.011 16.7 2.9 2 23 545 567 544 567 0.95
Sequence Information
- Coding Sequence
- ATGGCTATGAGCGTGAAAGACTTGTGTAGATTATGTGCAAAGAAAGACGAGTTTTCAAAAGATCTATTGGATGAAAGTAATAGAAATGTTCTAAAACTACTACAAGATTTTATACAAATTATCATTTTTGAGAATGACACTTTGCCAACGAAGATTTGCTTGAATTGTGAAGAAAAAATGGTGTCATTCCAACTATTTGTACTAGAATGTTATAAAGCCCAAGATACACTGAAAAAGATGTATGATGATAATTATGATTCTCTTGAAATTAAACTTGAACATACGCAGGCAGCTGTAGATTTTGGTGTCCCAATCAAATCTGAGGTTAAAGATGAAGTAACTGCAGATGATATAGTTTGTGCATTGAATAATGAGGCAACTTTATCTGTGATTGACGTTTTTCCGGATAGTCATAGTGATCATGATGACGTTGATATTCATAATGGTGAAGAGGAGGATGATGACTATCTTGATGACATAGCTATAGCAGAACTGAAGCCTAAACGTAAACGCATTAGAAGAAAGGAAATAACAGAACAGGAGGCTGAAGCATTCAGTCAAATTCTCAAAAAGTCCAATTTGAAAGTGAAAGATTTTGTCAAATTGCAGTGTGATTTCTGTGGAGAGAAACTGAAGACATGGAGTAGCTTACGAGTACATTATGCTAAAGAGCACAAGAGTGAACCATTTGTTTACTGCCTCTGTGGCTTTGCCGTAAGATCTAAAAGTGTTCTTTATAAACATGTATCAGACCATAAAATAGAAAGTAGAAAATTAAGGAAGAACTCAGAGGAATCAGAGAATGAAGAAAAACCAAATTTTAAATATGAAAGTTTAAATGTGAAAGATTTTATAAGGTTTCTGTGTCCCCACTGTGACAAGGAGTGTTCCAGTTGGTATAGACTGAAGGCGCATTCTGAGTACGCCCACAAAGTACAGCCAGTGGTGACTTGTATCTGTGGCATCACTCTTAAATCCAAGTCAGTCATGTACAAGCATGTGCAAGACCATAGGAATCCCAATGTTTTGACATGTGACAAGTGTCCCCGAATAACGAAAACCCTAACTGCCTTAAATAAACACAAAATGCGACATATACCAAAATCAGAGCGAAAGTTCTGTTGTGCTTCATGCGATAAAATATTTACTTCTAAAGATGCATTAAAATCTCACGAAAGGTCGCATATACCGATAGAGGAGCGTAAAATATATCGCTGTGATATGTGCAACATGAAATTCACGACTCGTTCGTCGGCGGCGTCGCACAAGCGCGTGGTGCACGACAAGATCAAGGGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATCCACAGCGACGACAAGCCCTTCGTCTGCAGGCACTGCTCCAAACCTTTTAAGACTTATTCGAACCTGAAGACGCACATGGACACTCACGAGGACACGTCGTACGAATGCTACATCTGTAGACGGGTGCTGAACAGTCGACGTACGCTCCGCAAACATCTGCTGGTACACGAAGACAAATGCAGGCACGTTTGCTCTTACTGCAACAAGGCGTTCAAGAGGAGACAGACTTTGAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCCGCGCAAGCGCACGACTCCTACCCCAACTACGACATGCAAGGGAATTACCTCAAGAATGACGTGGCAGTTGTAAATGTTCCAGTAGCAAAGAACGAAATTGAGGCTATGTAA
- Protein Sequence
- MAMSVKDLCRLCAKKDEFSKDLLDESNRNVLKLLQDFIQIIIFENDTLPTKICLNCEEKMVSFQLFVLECYKAQDTLKKMYDDNYDSLEIKLEHTQAAVDFGVPIKSEVKDEVTADDIVCALNNEATLSVIDVFPDSHSDHDDVDIHNGEEEDDDYLDDIAIAELKPKRKRIRRKEITEQEAEAFSQILKKSNLKVKDFVKLQCDFCGEKLKTWSSLRVHYAKEHKSEPFVYCLCGFAVRSKSVLYKHVSDHKIESRKLRKNSEESENEEKPNFKYESLNVKDFIRFLCPHCDKECSSWYRLKAHSEYAHKVQPVVTCICGITLKSKSVMYKHVQDHRNPNVLTCDKCPRITKTLTALNKHKMRHIPKSERKFCCASCDKIFTSKDALKSHERSHIPIEERKIYRCDMCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRHCSKPFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAAQAHDSYPNYDMQGNYLKNDVAVVNVPVAKNEIEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029509;
- 90% Identity
- iTF_01533293;
- 80% Identity
- -