Basic Information

Insect: Fissipunctia ypsillon
Gene Symbol: -
Assembly: GCA_947568875.1
Location: OX387644.1:14815563-14829361[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00022 0.023 16.0 0.2 2 23 118 140 117 140 0.95

2 12 1.7 1.8e+02 3.7 0.3 6 23 150 167 148 167 0.92

3 12 0.0044 0.47 11.8 3.3 1 23 202 225 202 225 0.88

4 12 2.2 2.3e+02 3.3 0.4 5 23 234 252 232 252 0.93

5 12 0.00018 0.019 16.2 1.0 2 23 259 280 258 280 0.97

6 12 7.8e-06 0.00082 20.5 0.7 1 23 288 310 288 310 0.98

7 12 0.00011 0.011 16.9 0.9 1 23 319 342 319 342 0.98

8 12 0.00017 0.018 16.2 0.2 1 23 348 370 348 370 0.97

9 12 1.1e-06 0.00011 23.2 2.2 1 23 376 398 376 398 0.98

10 12 0.0003 0.032 15.5 1.0 1 23 403 425 403 425 0.98

11 12 2.3e-06 0.00025 22.1 4.2 1 23 431 453 431 453 0.97

12 12 0.00011 0.011 16.9 2.9 2 23 460 482 459 482 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00022	0.023	16.0	0.2	2	23	118	140	117	140	0.95
2	12	1.7	1.8e+02	3.7	0.3	6	23	150	167	148	167	0.92
3	12	0.0044	0.47	11.8	3.3	1	23	202	225	202	225	0.88
4	12	2.2	2.3e+02	3.3	0.4	5	23	234	252	232	252	0.93
5	12	0.00018	0.019	16.2	1.0	2	23	259	280	258	280	0.97
6	12	7.8e-06	0.00082	20.5	0.7	1	23	288	310	288	310	0.98
7	12	0.00011	0.011	16.9	0.9	1	23	319	342	319	342	0.98
8	12	0.00017	0.018	16.2	0.2	1	23	348	370	348	370	0.97
9	12	1.1e-06	0.00011	23.2	2.2	1	23	376	398	376	398	0.98
10	12	0.0003	0.032	15.5	1.0	1	23	403	425	403	425	0.98
11	12	2.3e-06	0.00025	22.1	4.2	1	23	431	453	431	453	0.97
12	12	0.00011	0.011	16.9	2.9	2	23	460	482	459	482	0.95

Sequence Information

Coding Sequence: ATGAGAAAAGGGTCTTTGGAATACATTGCAAAGGAAATGAATTTAGGAAGCACCAGTGCAGTTAAAGATGAAGTAACTGCAGATGATATAGTTTGTGCATTGAATAATGAGGCAGCTTTATCAGTGATAGACGTTTTCCCAGATAGTCATAGTGATCATGATGATGTTGATATTCACAATGGTGAAGACGATAATGATGAGGATGATGACTATCTTGATGACATAGCTATAGCAGAACTGAAGCCTAAACGTAAACGCATCAGAAGAAAGGAAATAACAGAGCAGGAGGCAGAAGCATTTAGCCAAATTCTCAAAAAGCCCAATTTGAAAGTGAAAGATTTTGTCAAATTGCAGTGTGATTTCTGTGGAGAGAAACTGAAGACATGGAGTGGCTTACGAGTACATTATGCTAAAGAGCACAAGAGTGAACCATTTGTTTACTGCCTGTGTGGCTTTGCTGTGAGATCTAAAAGTGTTCTTTACAAACATGTGTCAGACCATAAAATAGAAAGTAGAAAATTAAGGAAGAACTTAGAGGAATCTGAAAATGAAGAAAAACAAAATTTTAATTATGCAAGTTTGAATGTGAAAGATTTTATAAGGTTTCTATGTAGCCACTGTGACAAGGAGTGTTCCAGTTGGTATAGACTAAAGGCTCATTCTGAGTATGCTCACAAAGTACCGCCAGTGGTGACTTGTAACTGTGGCATTACTCTTAAATCCAAGTCAGTCATGTACAAGCATGTGCAAGACCATAGGAATCCCAATGTATTGACATGTGACAAGTGTCCCCGAATAACGAAAACCCTATCTGCCTTAAATAAACACAAGATGCGACATATACCAAAATCAGAGAGAAAGTTCAGTTGTGCTTCATGCGACAAAATATTTACTTCTAAAGATGCATTAAAATCTCACGAGAGGTCGCATATACCGATAGAGGATCGTAAAATATATCGCTGTGATATGTGCAACATGAAATTCACGACTCGTTCGTCGGCGGCGTCGCACAAGCGTGTGGTACACGATAAGATCAAGGGCTACGTGTGCGACCTGTGCGGGTATGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGACAAGCCTTTCGTCTGCAGGAACTGCTCCAAACCTTTCAAGACTTATTCGAACCTGAAGACGCACATGGACACTCATGAGGACACGTCGTACGAATGCTACATCTGTAGACGGGTGCTGAACAGTCGACGCACGCTCCGCAAACATCTGCTGGTACACGAAGACAAATGCAGGCACGTTTGCTCTTACTGCAACAAGGCGTTCAAGAGGAGACAGACTTTGAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCACATCGCCTGCGCTGCCACCCCGACAAGATGGCTGCGCAAGCGCACAACTCCTACCCCAACTACGACATGCAAGGGAATTACATCAAAAATGACGGGGCGCCTGTAAATGTTCCAGTAGCAAAGAACGAAGTTGAGGCTATGTAA
Protein Sequence: MRKGSLEYIAKEMNLGSTSAVKDEVTADDIVCALNNEAALSVIDVFPDSHSDHDDVDIHNGEDDNDEDDDYLDDIAIAELKPKRKRIRRKEITEQEAEAFSQILKKPNLKVKDFVKLQCDFCGEKLKTWSGLRVHYAKEHKSEPFVYCLCGFAVRSKSVLYKHVSDHKIESRKLRKNLEESENEEKQNFNYASLNVKDFIRFLCSHCDKECSSWYRLKAHSEYAHKVPPVVTCNCGITLKSKSVMYKHVQDHRNPNVLTCDKCPRITKTLSALNKHKMRHIPKSERKFSCASCDKIFTSKDALKSHERSHIPIEDRKIYRCDMCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRNCSKPFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAAQAHNSYPNYDMQGNYIKNDGAPVNVPVAKNEVEAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01029509;
90% Identity: iTF_01533293;
80% Identity: -