Basic Information

Insect: Gortyna flavago
Gene Symbol: -
Assembly: GCA_963669345.1
Location: OY770126.1:11999050-12005353[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00033 0.027 15.7 0.2 2 23 206 228 205 228 0.95

2 12 2.6 2.1e+02 3.4 0.3 6 23 238 255 236 255 0.92

3 12 0.0029 0.23 12.7 3.4 1 23 290 313 290 313 0.88

4 12 5.8 4.7e+02 2.3 1.0 5 23 322 340 320 340 0.92

5 12 0.00027 0.022 16.0 1.0 2 23 347 368 346 368 0.97

6 12 5.9e-05 0.0048 18.0 2.3 1 23 376 398 376 398 0.97

7 12 0.00016 0.013 16.7 0.9 1 23 407 430 407 430 0.98

8 12 0.00027 0.021 16.0 0.2 1 23 436 458 436 458 0.97

9 12 1.6e-06 0.00013 23.0 2.2 1 23 464 486 464 486 0.98

10 12 0.00046 0.037 15.2 1.0 1 23 491 513 491 513 0.98

11 12 3.5e-06 0.00029 21.9 4.2 1 23 519 541 519 541 0.97

12 12 0.00016 0.013 16.7 2.9 2 23 548 570 547 570 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00033	0.027	15.7	0.2	2	23	206	228	205	228	0.95
2	12	2.6	2.1e+02	3.4	0.3	6	23	238	255	236	255	0.92
3	12	0.0029	0.23	12.7	3.4	1	23	290	313	290	313	0.88
4	12	5.8	4.7e+02	2.3	1.0	5	23	322	340	320	340	0.92
5	12	0.00027	0.022	16.0	1.0	2	23	347	368	346	368	0.97
6	12	5.9e-05	0.0048	18.0	2.3	1	23	376	398	376	398	0.97
7	12	0.00016	0.013	16.7	0.9	1	23	407	430	407	430	0.98
8	12	0.00027	0.021	16.0	0.2	1	23	436	458	436	458	0.97
9	12	1.6e-06	0.00013	23.0	2.2	1	23	464	486	464	486	0.98
10	12	0.00046	0.037	15.2	1.0	1	23	491	513	491	513	0.98
11	12	3.5e-06	0.00029	21.9	4.2	1	23	519	541	519	541	0.97
12	12	0.00016	0.013	16.7	2.9	2	23	548	570	547	570	0.95

Sequence Information

Coding Sequence: ATGGCTATGAGCGTGAAAGACTTGTGTAGACTATGTGCAAAAAAAGACGAGTTTTCAAAAGATCTATTGGATGAAAGTAATAGAAATGTTCTAAAACTACTACAagatttcatacaaattatcATCTTTGAGAATGACACTTTACCAACGAAGATTTGCTTAAATTGTGAAGAAAAAATGGTGTCATTCCAACTATTTGTACTAGAATGTTATAAAGCCCAAGATACACTGAAAAAGATgtatgatgataattatgattctCTTGATATTAAACTTGAACAAACGCAGGCAGCTGTAGATTTTGGTGTCCCAATCAAATCTGAGgTCAAAGATGAAGTAACTGCAGATGATATAGTTTGTGCATTGAATAATGAGGCAGCTTTATCAGTAATAGATGTTTTCCCGGATAGTCATAGTGATCATGACGATGCTGATATTCACAATGGTGAAGAAGataatgatgaagatgatgactATCTTGATGACATAGCAATAGCAGAACTGAAGCCTAAACGTAAACGCATTAGAAGAAAGGAAATAACAGAACAGGAGGCTGAAGCGTTTAACCAAATTCTTAAAAAGCCCAATTTGAAAGTGAAAGATTTTGTCAAattgcAGTGTGATTTCTGTGGAGAGAAACTGAAGACATGGAGTGGCTTACGAGTACATTATGCTAAAGACCATAAGAGTGAACCATTTGTTTACTGCTTGTGTGGCTTTGCCGTAAGATCGAAAAGTGTTCTTTACAAACATGTATCAGACCATAAAATAGAAAGTAGAAAATTAAGGAAGAACTCAGAGGAATCTGAGaatgaagaaaaacaaaattttaattatgcaaGTTTGAATGTGAAAGATTTTATAAGgTTTCTATGTCCTCATTGTGACAAGGAGTGTTCCAGTTGGTATAGACTGAAAGCGCATTCTGAGTATACTCACAAAGTACCGCCCGTGGTGACTTGTATCTGCGGCATTACTCTTAAATCCAAGTCAGTCATGTACAAGCATGTGCACGACCATAGGAATCCTAATGTTTTGACATGTGACAAGTGTCCCCGAATAACGAAAACTCTATCTGCCTTAAATAAACACAAGATGCGACATATACCAAAATCAGAGAGAAAGTTCTGTTGCGCTTCATGCGACAAAATATTTACTTCTAAAGATGCATTAAAATCTCACGAAAGGTCGCATATACCGATAGAGGAGCGTAAAATATATCGCTGTGACATGTGCAACATGAAATTCACGACTCGTTCGTCGGCGGCGTCGCACAAGCGCGTTGTGCACGACAAGATTAAGGGCTACGTGTGCGACCTGTGCGGGTACGCGTGTGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGTGACGACAAGCCCTTCGTCTGCAGGAACTGCTCCAAACCtttcaaGACTTATTCGAATCTGAAGACCCATATGGACACTCATGAGGACACGTCGTACGAATGCTACATCTGTCGACGGGTGCTGAACAGTCGCCGCACGCTCCGCAAACATCTGCTGGTACACGAAGACAAATGCAGGCACGTTTGCTCCTACTGCAACAAGGCATTCAAGAGGAGACAGACTTTGAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCTGCGCAAGCGCACGACTCCTACCCCAACTACGACATGCAAGGGAATTACATCAAGAATGACGTGCCGCCTGTAAATGTTCCAGTAGCAAAGAACGAAGTTGAGGCTATGTAA
Protein Sequence: MAMSVKDLCRLCAKKDEFSKDLLDESNRNVLKLLQDFIQIIIFENDTLPTKICLNCEEKMVSFQLFVLECYKAQDTLKKMYDDNYDSLDIKLEQTQAAVDFGVPIKSEVKDEVTADDIVCALNNEAALSVIDVFPDSHSDHDDADIHNGEEDNDEDDDYLDDIAIAELKPKRKRIRRKEITEQEAEAFNQILKKPNLKVKDFVKLQCDFCGEKLKTWSGLRVHYAKDHKSEPFVYCLCGFAVRSKSVLYKHVSDHKIESRKLRKNSEESENEEKQNFNYASLNVKDFIRFLCPHCDKECSSWYRLKAHSEYTHKVPPVVTCICGITLKSKSVMYKHVHDHRNPNVLTCDKCPRITKTLSALNKHKMRHIPKSERKFCCASCDKIFTSKDALKSHERSHIPIEERKIYRCDMCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRNCSKPFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAAQAHDSYPNYDMQGNYIKNDVPPVNVPVAKNEVEAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01029509;
90% Identity: iTF_01533293;
80% Identity: -