Alep021554.1
Basic Information
- Insect
- Athetis lepigone
- Gene Symbol
- -
- Assembly
- GCA_033675125.1
- Location
- CM066232.1:12801255-12811248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00035 0.037 15.6 0.2 2 23 207 229 206 229 0.95 2 12 2.7 2.8e+02 3.4 0.3 6 23 239 256 237 256 0.92 3 12 0.0014 0.15 13.7 3.3 1 21 292 312 292 315 0.89 4 12 1.8 1.9e+02 3.9 0.3 5 23 324 342 322 342 0.94 5 12 0.00037 0.039 15.5 0.9 2 23 349 370 348 370 0.96 6 12 8.3e-05 0.0086 17.6 2.5 1 23 378 400 378 400 0.96 7 12 0.00099 0.1 14.2 2.0 1 23 409 432 409 432 0.97 8 12 0.00027 0.028 16.0 0.2 1 23 438 460 438 460 0.97 9 12 1.3e-06 0.00014 23.2 2.7 1 23 466 488 466 488 0.98 10 12 0.00047 0.049 15.2 1.0 1 23 493 515 493 515 0.98 11 12 3.6e-06 0.00037 21.9 4.2 1 23 521 543 521 543 0.97 12 12 0.00016 0.017 16.7 2.9 2 23 550 572 549 572 0.95
Sequence Information
- Coding Sequence
- ATGGCTATGAGCGTAAAAGACTTATGTAGATTATGtgcaaaaaaagaagaattttcAAAAGATCTATTGGATGAAAGTAATAGAAATCTTTTAAAGTTACTGCaagattttgtacaaattattATATTTGAAAACGATACTTTGCCAACGAGGATTTGCTTGAATTGTGAAGAAAAAATGGTATCTTTTCAACTGTTTGTTCTGGAATGTTATAAAACCCAAGATGCACTAAAAGCAATGTATGAAGATAATTATGATTCTGTGGGTATTAAAATTGAACAAACTCAAGGAACTGTAGATTTTGGTGTCCCAATCAAATCTGAGgtTAAAGATGAAGTTACTGCAGATGATTTAGTTTGTGCATTAAACAATCAGGGAACATTAGCAGTGATTGATGTATTCCCGCAAGCTCATAGTGATCATGATGATGTTGATATTCACAATGGtggtgatgataatgatgagGATGATGAATATCTTGATGATATTGCAATAGCAGCACTGAAGCCCATGAAACGTAAACGCATCAGAAGAAAAGAGATAACAGAACAGGAGGCAGAAGAGTTTAACCAAATCCTAAAAAAGCCCAATTTAAAAGTGAAGGATTTTGTAAAattgcAATGTGATTTCTGTGGAGAAAAATTAAAGACCTGGAGTGGCTTGCGGGTACATTATGCAAAACAGCATAAGAGTGAACCATTTGTTTACTGCCTGTGTGGTTTTGCAGTAAGATCTAAGAGTGTTCTTTACAAACATGTATCAGACCATAAAATAGAAAGTAGAAAATTAAGAAAGGATTCAGAAGaatctgatgatgatgaaaagtCACAAAGTTACAAATATGCAAATTTAAATGTTAAGGATTTTATAAGGTTTATATGTCCCCACTGTGACAAGGAGTGCTCAAGTTGGTACAGACTGAAGGCACATTCTGAATTTACTCACAAAGTATCACCAGTAGTGTCTTGTATCTGCGGTATCACTCTTAAATCCAAGTCAGTCATGTATAAGCATGTACAAGACCATAGGAATCCAAATGTGTTGTCATGTGATAAATGTCCTCGCATAACAAAAACCCTATCAGCTTTAAATAAGCATAAAATGAGACATATACCAAAATCGGAGAGAAAGTTCTGTTGTGTTTCAtgtgataaaatatttacttccaAGGATGCATTGAAATCACACGAAAGATCGCATATACCAATAGAGGAGCGTAAAATATACCATTGTGATATGTGTAATATGAAATTCACGACTCGTTCGTCGGCGGCGTCGCACAAGCGCGTGGTGCACGACAAGATCAAGGGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGTCAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTGTGCAGGAAATGCTCCAAACCTTTCAAGACCTATTCAAATCTGAAGACTCACATGGACACTCACGAGGACACGTCTTACGAGTGTTACATCTGTCGGCGAGTGCTGAACAGTCGGCGCACGCTGCGCAAACATCTGTTGGTGCACGAAGACAAGTGTAGGCATGTCTGCTCGTACTGCAACAAGGCATTTAAGAGGAGACAGACTTTAAAGGTGCACATGTACACGCATACGGGAGACAAGCCCTTGACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCGACACTGCGCTCGCACCGCCTGCGCTGTCACCCCGACAAGATGACCGCGCAGGCGCACGTCTCCTACCCCAACTACGACATGCAAGGGaattaTATCAAGAATGACGTGGCACCTATAAATGTTCCAGTAGCAAAGAACGAAGTTGAGGCTATGTAA
- Protein Sequence
- MAMSVKDLCRLCAKKEEFSKDLLDESNRNLLKLLQDFVQIIIFENDTLPTRICLNCEEKMVSFQLFVLECYKTQDALKAMYEDNYDSVGIKIEQTQGTVDFGVPIKSEVKDEVTADDLVCALNNQGTLAVIDVFPQAHSDHDDVDIHNGGDDNDEDDEYLDDIAIAALKPMKRKRIRRKEITEQEAEEFNQILKKPNLKVKDFVKLQCDFCGEKLKTWSGLRVHYAKQHKSEPFVYCLCGFAVRSKSVLYKHVSDHKIESRKLRKDSEESDDDEKSQSYKYANLNVKDFIRFICPHCDKECSSWYRLKAHSEFTHKVSPVVSCICGITLKSKSVMYKHVQDHRNPNVLSCDKCPRITKTLSALNKHKMRHIPKSERKFCCVSCDKIFTSKDALKSHERSHIPIEERKIYHCDMCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMTAQAHVSYPNYDMQGNYIKNDVAPINVPVAKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029509;
- 90% Identity
- iTF_01533293;
- 80% Identity
- -