Xict033492.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- -
- Assembly
- GCA_949128155.2
- Location
- OX421957.2:5055829-5069495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.2 9.8e+02 1.7 1.9 1 23 204 227 204 227 0.86 2 13 0.0018 0.19 13.4 0.6 1 23 321 344 321 344 0.92 3 13 0.01 1.1 11.0 0.1 2 21 382 401 381 402 0.93 4 13 1.9 2e+02 3.9 1.7 1 19 706 723 706 725 0.76 5 13 1 1.1e+02 4.7 4.2 1 23 738 760 738 760 0.96 6 13 0.0087 0.93 11.2 0.4 2 23 766 787 765 787 0.95 7 13 2.4 2.6e+02 3.5 0.5 1 9 810 818 810 832 0.73 8 13 0.00092 0.098 14.3 0.3 2 23 912 933 911 933 0.97 9 13 5.9e-07 6.4e-05 24.3 2.7 1 23 939 961 939 961 0.99 10 13 2.1e-05 0.0022 19.5 0.3 2 23 967 988 966 988 0.96 11 13 0.0011 0.12 14.1 1.9 2 23 995 1017 994 1017 0.96 12 13 1.6 1.7e+02 4.1 0.2 1 19 1024 1042 1024 1043 0.81 13 13 0.001 0.11 14.2 2.5 3 23 1056 1076 1055 1077 0.95
Sequence Information
- Coding Sequence
- ATGGCGGACACATCCAGAAAAAGGTCGAGAAAGTCGAAATTAGTGCCTCGAGAGTGTGCTGTAGACGAAGATGATCTTGAATTGCAGATTCCAGAGGCGAAAGTACCTAAAATCACGAAACAGACCACGTACAGACCACCAGCAAAAAAAGCGATAGTAAAATCACCAGAGCCCATCATTCCCAAAAGAGAAGTATGCAACACAAGTGtcctaaaaaaaatcaatgcaTCGGCCAAAGAAGACACTGAGCCAGAATCTAAAGTATCCCCAAGAAAATTCGAAATTAACATTGAAGTGGAATCttgtgatgatgatgacaaatTTTCAGGAGTTGCTGACGAAAATCATTTAGAGTCGCTCATCACGACGAGAGTACGAACCGAACCTATAGAACTCTCTCGTGAAATTATAATTGATGCCGCCGACAACATACTCCAGAATTCAACAGATGTTGCtgataaaatacttaatatataCGTTAGGAATACTATAGGTTATGAAGGTAAAAGGAAGTTGGTACAGGACGAACGTGAGAGGCGAATACAACAGGCTCTAGATGAGTGGCGCACTTGGCAGTTTCGTAGTTTCCACAGGGAGGATCCTCTATTCTATAAATGCTATATTTGTACGAGATCCTGGTGGCATTTAACAGACTTCCGTAATCATTTGTCTTCTGAACACGCTGATGATTTAAAAGTTCTAATTGCTTTGGAAAAATATGAAATGCATGAAGCCAATTTGATAGCATACCTCAAATATAATTGGGTGGCTGATATAAAAGATATATATACAGAAGGCCTCTGTTACCGCTGCGGTAAGGATTATGGTGCTCATGAGTTAGGATCGAGGTTCCAAGAGAAGTTTTACAAAAACAGAGGTTGCACTAAGCAATTTTTCAGCTGTATGGGCCTGAGGGACCACTTTTCTAGCTGTTCTGTGTGTAAAAATCAGGATAAACTGTACAAATGTGATATTTGTAAGTCAAGATTTAATACACAAGAGGAATTATACGACCATTTAGTATTGTCTCATTCTGTTCGGTCCGATGTACCGATAATGGCCCACTACAAAAACTGCAAGCGCTGTTCAGAAAGGTATTGTTGTCAATATTTGCACAAATGCGGACAAAAGGAACCTCATTCTGAGTGTCCCCACTGTCTACAGAGCTTCTCAAATGTTATGTCTTTGGAGATCCATATTGAACGGTCAAGTAAACCATACAAATGTGAAGTTTGTCGAGCAGTAATGACGTATAGCTGTAAGAAATATGAACATATGTTGGCACATACAGACAAGTACATGATTGTCAGGAAGTGCGTGGCATGTAAGGGTCTGAACgtgtttataaataatgaagATGCAATAGAACATCGGTTGTTGAAACATGAGTTCAGGGAAACGAAACGTCAAAGTTATTTTCCaaaaattttagttCCGTCGTCGTGCGTTTATCAAAGTTTAGCAGAATCAGAATCGAAAGAACCAGAATCTGTATTGGAGGAACAAGAATCGGTACTGGAAGAAAATGAATCCGTACTGGAAGAACAAGAATCCTTACCGGAAGAAGAAGAATCCTTACCAGAAGAAGAAGAATCCTTTCCGGAAGAAGCAAAATACGTACCGAAAGAAGAATTGGTATCAAAAAGTGAAAGAGAATCAGTTTCAGTATGTGAACAGAAATTGTTACAAGCAGAGCTAGAATCAGCAACAGAATTTTTATTGGGATCCGTTGTAGTTAAAGaAGAGCCAGAAGACTCAGAAGGTAGCCCAAGACTTGTAATCAAAGAAGAACCATTCGAAGAATTTGAAAACCAAATGCATGAAACAAATCGAACGGAGAATTTTGAACATGAAGTAAGTGTCAAGGAAGAATACATAGACGAAGAATCCGATGAATATGAGGGAGATATTATCAAACTGAACTTCAATATAGAAGACTTATTAGTGAAACAAGAATCAATTCAAGAAGATGACGTTTATACTTTAGAACGGACAGAAGAGAACCGAGAATCAGAAGATGATAATGATTCAGAAGAATTTCCTCAACAGTTAAAAGACTCAATGCTGGAACCAGAAGTTATTATAGAAGGTGATTACAGAAAAAACCAAAAAGTATACAGATGTACTAAATGTGGATTCACAGCGAAACATAAACAATATAGAAATCACATAGACTATGACTGTGGCACAAATCCCGTTAAACATAAAACATACACATGTacgaaatgtcaaaataaatttgtgtctatgaaaaaatatttgacacatTTCAAAGAGCATGGGTACAAGCACCTGTCCTGTCCGGATTGCTTGAAAGAATTCGACACATTCACAAATTTAGGACAGCATTTAACACAACatgttaaacaaaattttgttagGGTAAAAATGATCACTCATGCTGGCAAAGCGATGACAAAACCCGATTATCAGTGTAAAAAATGTGGACAAattatagtttattataaattttttgaACATTGGGAGCTGCATATTAATGCCCAACCTACACATCCTATCAAGGTCACTTCTAGACCAAAGCATAAGGATGGAGAATTGCACGGAGAATTACATGAAACTATTATAAAAGAGTGCATTGccCGCCTCAACAAACAGCCAAAAGAATGCAACCACTGCCACCGTTGGTTCAAGCGAGTGAACGAATGCAAGCGCCACATCATTGAACATCTACTATCTGACGCATACAACCAGAAACACATCTACAGCGAACTCAAATGCCAAGTCTGTGAACAAGGGTTCGCTACACCAGAGAGATACAAACAGCATATGCGAGACCATGCCTCGCTACCCGTTTACAAGTGCGAACTGTGTGACCGTACCTTTAGTGATTCTAGTAactttacaaaacataaaaaggtacataatttaaaagtgaTTGTCTGTGATTTGTGCGGTAAAAAGTTCCAGTCGAAAGTGTCTTTGGAGAAACATATTGAGAAGCACAAAAACACAGAGCCAATTACCTGTAAGATTTGCAACAAGATCTTCTATTTCGACACCTCGTACCGGCGCCACATACGATACTTCCACGAAAAAACCGTAATTGGTTACCGCTGCGTTATCTGCAGTGAACGATTCGACAGTCTAAAACGTAAATGGGACCATATGTGGGATGTACATAAAGAGAGGAAGCAGAAAGCAGACTGTCCCATATGCCATCAGTCCTTCAGGAAGTACTCCGATGTTCGAGTCCACGCCAGGCTACACCATTTGACAGAAGTGTCCgtgttaaacttaaaaaaaaatgcaaaaaatccCAATTTAGATATTGATAAGTTTTTAAGGGATTCTGCCAAGATTAAAGTTGGAAGGATGGAAACTTTAGTTGTGTATGATTCAGATTGA
- Protein Sequence
- MADTSRKRSRKSKLVPRECAVDEDDLELQIPEAKVPKITKQTTYRPPAKKAIVKSPEPIIPKREVCNTSVLKKINASAKEDTEPESKVSPRKFEINIEVESCDDDDKFSGVADENHLESLITTRVRTEPIELSREIIIDAADNILQNSTDVADKILNIYVRNTIGYEGKRKLVQDERERRIQQALDEWRTWQFRSFHREDPLFYKCYICTRSWWHLTDFRNHLSSEHADDLKVLIALEKYEMHEANLIAYLKYNWVADIKDIYTEGLCYRCGKDYGAHELGSRFQEKFYKNRGCTKQFFSCMGLRDHFSSCSVCKNQDKLYKCDICKSRFNTQEELYDHLVLSHSVRSDVPIMAHYKNCKRCSERYCCQYLHKCGQKEPHSECPHCLQSFSNVMSLEIHIERSSKPYKCEVCRAVMTYSCKKYEHMLAHTDKYMIVRKCVACKGLNVFINNEDAIEHRLLKHEFRETKRQSYFPKILVPSSCVYQSLAESESKEPESVLEEQESVLEENESVLEEQESLPEEEESLPEEEESFPEEAKYVPKEELVSKSERESVSVCEQKLLQAELESATEFLLGSVVVKEEPEDSEGSPRLVIKEEPFEEFENQMHETNRTENFEHEVSVKEEYIDEESDEYEGDIIKLNFNIEDLLVKQESIQEDDVYTLERTEENRESEDDNDSEEFPQQLKDSMLEPEVIIEGDYRKNQKVYRCTKCGFTAKHKQYRNHIDYDCGTNPVKHKTYTCTKCQNKFVSMKKYLTHFKEHGYKHLSCPDCLKEFDTFTNLGQHLTQHVKQNFVRVKMITHAGKAMTKPDYQCKKCGQIIVYYKFFEHWELHINAQPTHPIKVTSRPKHKDGELHGELHETIIKECIARLNKQPKECNHCHRWFKRVNECKRHIIEHLLSDAYNQKHIYSELKCQVCEQGFATPERYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIVCDLCGKKFQSKVSLEKHIEKHKNTEPITCKICNKIFYFDTSYRRHIRYFHEKTVIGYRCVICSERFDSLKRKWDHMWDVHKERKQKADCPICHQSFRKYSDVRVHARLHHLTEVSVLNLKKNAKNPNLDIDKFLRDSAKIKVGRMETLVVYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00364516; iTF_00726917; iTF_00425938; iTF_00906714; iTF_00906633; iTF_00908399; iTF_00907478; iTF_01527836; iTF_00038272; iTF_00039328;
- 90% Identity
- -
- 80% Identity
- -