Lsem010152.1
Basic Information
- Insect
- Lithophane semibrunnea
- Gene Symbol
- -
- Assembly
- GCA_947363905.1
- Location
- OX376215.1:4044309-4054926[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2 3.8e+02 2.3 1.5 1 23 213 236 213 236 0.79 2 13 0.045 3.4 8.8 1.3 1 23 330 353 330 353 0.92 3 13 0.0064 0.47 11.5 0.3 2 22 391 411 390 411 0.94 4 13 2.1 1.6e+02 3.5 1.3 1 16 728 742 728 747 0.74 5 13 0.36 27 6.0 3.2 1 23 760 782 760 782 0.96 6 13 0.018 1.4 10.0 0.4 2 23 788 809 787 809 0.95 7 13 0.88 65 4.7 0.7 1 9 832 840 832 853 0.84 8 13 0.0056 0.42 11.6 0.2 2 23 930 951 929 951 0.96 9 13 5.2e-07 3.9e-05 24.3 2.7 1 23 957 979 957 979 0.99 10 13 0.00016 0.012 16.5 0.3 2 23 985 1006 984 1006 0.96 11 13 0.0031 0.23 12.4 1.8 2 23 1013 1035 1012 1035 0.96 12 13 0.48 36 5.5 0.1 1 20 1042 1061 1042 1061 0.91 13 13 0.0021 0.16 13.0 1.8 3 23 1074 1094 1073 1095 0.95
Sequence Information
- Coding Sequence
- ATGGCGGACACATCCAGAAAAAGGTCGAGAAAGTCGAAATTAGTGCCTCGAGAGTGTGCTGTAGACGAAGATGATCTTGAATTGCAGGTCCCAGAGGCGAAAGTATCTAAAACCACAAAACTGGCCACCAGACATCCATTGAAAAAGGTGATAATAAAAATACCAGAGCCCATTTCAACACCAGAGCCCATTTCAATACCAGAAGTCTACGACAAAAGTGTCCTAAAAAAAATCAACGCGTCAGCCAAAGAAGATACAGTGCCACCATCTAAGACATCACCTAGAAAATTCGAAATAAACATAGAAGTTGAATCTTGCGATGACGACGAAGAAATTGCAAGCAAAGCTGATGAAAATCATTTACCAACGATTCAAAAAGATTCACTCCTCGCGGCAAAAATACGAACCGAACCTATAGCCCTCTCTCGTGAAATTATAATAGATGCTGCAGACAATATACTCAAGAATTCAACAGATGTTGCTGATAGAATCCTTAATATACACGTTAGGAATACGATAGGCTATGAAAATATTGACAGGCTGGTACTAAATTGGCAAGAGAAGAAAATACAAGAGACTCTAGATGAGTGGCGCACGTGGCAGTTCCGTAGCTTCCATAGAGAAGCCCCACTATTCTATAAATGTTATATCTGTACGAAATCCTGGTGGCATTTAAATGACTTCCGGAACCATTTGTCGTTAGAACACGCTGACGATTCAACAGTGATAATTACTTGGGAAAAGTATGAAATGCATGAAGCCAATTTGATAGCGTACCGCAAAAATAATTGGGTGGTTGATGTGGTAGATATATATACAGAAGGCCTCTGTTACCGCTGCGGGAAGGATTATGCTGCGCATGAGTTAGAATCGAGGTTTCAAGAGAAGTTTTATAAAATTAAAGGTTGCACGAAGCAGTTTTTCAGTTGTATGGGTCTAAGGGACCACTTTTCTAGCTGTTCTGTGTGTAAGCATCAGGCTAAGCCATTCAAATGTGATATATGTAAGTCAAGATTTGATACAGTGAAGGAATTACACGACCATTTAGTATTGTCTCATTCTGTGCGATCCGATATACCGATAATGGCTCATTATAAAAACTGCAAGCGCTGTTTAGAAAGGTTTTGTTGTCAATATTTGCACAATTGCGGTCAAAAGGGGCCTCATTCTGAGTGTCCACACTGTCTACAGAGCTTCTCAAATGTCATGTCTTTGGAGATTCATTTGAAACGGTCGAGTAAACCGTACAAATGTGAGGTTTGTCGAGCTGTGATGATGTACAGCTGTAAGAAATATGAACATATGTTGGCACATACAGACAAGTACATGCTTGTAAGGAAGTGCATGGCATGTGAGGGTTTGAATGTGTTTATAAATAATGAAGATGCAGTACTGCATCGGTCATTGAAACATGACTTCAAGGATACAAAACGTCAAAGCTATTTTCCGAAGATTTTAGTACCGTCATCCTGCGTACATCAAAGTTTAGCAGAATCAGAATCGAAAAAACTGGAATCAGTATTGGAGGTACAAGAAACAGTAGTGGAAAAGGAAGAATCCGTACCAGAAGGAGGAGTGGATACTCCTTCCGTGGTACCGGAACAAGAATCCGTACCAGAAGAAGAATTCGTACCAGAAGCAGAAGTATCCATACCAGAAGAATCCGTACTAGAAGAAGAATCCGTACCAGAAGAAGAATTGGTATCAAAAAGTGAAAATGAAGCAGTTTCAGTATGTGAACAGAGGTTGTTACAAGCCGAGCTAGAATCAGCAACAGAATTTTTATTGGAATCTGTTGTAGTCAAGGAAGAGCCAGAAGTCTCAGAAGGTAGCCCAGGACTTGTAATCAAAGAAGAACAATTCGAAGAATTTGAAAACCAACTGCATGAAGAAGAAAATAGAACCGAGAATTTTGAACACGAAATAAGTGTCAAAGAAGAATTCGTAGAGGAAGAATACGATGAATATGAAGGAGATATTATCAAATTGAACTTTGATATAGAAGACTTATTAGTGAAACAAGAATCCATTCAAGAAGATGACGATTATACTGCAGAACGGACAGAAGAGCACCAAGAATCAGAAGACGATGAAGATTCAGAAGAATTTTCACAACGATTGAAAGATTCCATGCTGGAACCTGAAGTTATCATAGCAGGGCATGGGAAAAATCAAAAATTATACAGATGTACTAAATGTGGATTCACAGCGAAACATAGACAATATAGAAGTCACATAGACTATGACTGCGGTACAAACCCAATTAACCATAAAACATACCGATGCACGAAATGTCAAAATGTATTTGTGTCCATGAAAAAATATTTAACACATTTCAAAGACCATGGGTACAAGCACCTGTCCTGTCCGGAATGCCTGAAAGATTTCGACACATTCACAAATTTAGGGCAGCATTTAACACAACATGTGAAACAAAATTTCGTTCGAGTGAAAATGATTACACATGCGGGCAAGGCCATGACGAAACCTGATTATCAATGCAAAAAGTGTGGGAAAATCATAGCGTTTCATAAGTTTTTTGAGCATTGGGAGCTCCATATCAATGCCCAGCCTACGCACCCTATCAAGGTGACATCTAGGCCTAACCATAAACACGGAGAATTGCATGAAACTATTATAAAGGAGTGCATTGCTCGTTTAAACAAGCAGCCCAAAGAGTGCAACCACTGCCACCGTTGGTTCAAAAGAGTAAACGAATGCAAGCGCCACATCATTGAACATCTACTTGCTGACGCTTACAACCAGAAACACATTTATAAGGAGCTCAAATGCCAAGTCTGTGAACAAGGATTCGCTGTACCAGAGAGATACAAACAGCATATGCGAGACCATGCCTCGCTACCCGTGTACAAGTGTGAACTGTGCGACCGTACCTTTAGTGACTCTAGTAATTTTACAAAACATAAAAAGGTACACAATTTGAAAGTGATTGTGTGCGATTTGTGCGGTAAAAAGTTCCAGTCAAAAGTGTCTCTGGGGAAACATATTGAGAAGCACAAAAGCACAGAGCCAATTACATGTAAGATTTGCAACAAAATCTTCTACTTTGACACTTCTTACCGGCGCCACGTACGGTACTTCCACGAAAAAACTGTCATAGGTTACCGTTGTGTTATCTGCAGTGAACGATTCGACAGTTTAAAACTAAAATGGGACCATATGTGGGACATACATAAGGAACGCAAGCAAAAAGCTGACTGCCCCATATGCCATCAGTCATTCAGAAAGTACGCCGATGTCCGTGTCCATGCAAGATTACATCATCTGACAGAAGTATCAGTGGTAAATGTCAAGAAGAAATCAATGAACCCAAATATAAATATTGATAAGTATTTGAGGGATCAGGCTAAGATTAAAGTCGGGAGGATGGAGACTTTAGTCGTTTATGATTCAGATTGA
- Protein Sequence
- MADTSRKRSRKSKLVPRECAVDEDDLELQVPEAKVSKTTKLATRHPLKKVIIKIPEPISTPEPISIPEVYDKSVLKKINASAKEDTVPPSKTSPRKFEINIEVESCDDDEEIASKADENHLPTIQKDSLLAAKIRTEPIALSREIIIDAADNILKNSTDVADRILNIHVRNTIGYENIDRLVLNWQEKKIQETLDEWRTWQFRSFHREAPLFYKCYICTKSWWHLNDFRNHLSLEHADDSTVIITWEKYEMHEANLIAYRKNNWVVDVVDIYTEGLCYRCGKDYAAHELESRFQEKFYKIKGCTKQFFSCMGLRDHFSSCSVCKHQAKPFKCDICKSRFDTVKELHDHLVLSHSVRSDIPIMAHYKNCKRCLERFCCQYLHNCGQKGPHSECPHCLQSFSNVMSLEIHLKRSSKPYKCEVCRAVMMYSCKKYEHMLAHTDKYMLVRKCMACEGLNVFINNEDAVLHRSLKHDFKDTKRQSYFPKILVPSSCVHQSLAESESKKLESVLEVQETVVEKEESVPEGGVDTPSVVPEQESVPEEEFVPEAEVSIPEESVLEEESVPEEELVSKSENEAVSVCEQRLLQAELESATEFLLESVVVKEEPEVSEGSPGLVIKEEQFEEFENQLHEEENRTENFEHEISVKEEFVEEEYDEYEGDIIKLNFDIEDLLVKQESIQEDDDYTAERTEEHQESEDDEDSEEFSQRLKDSMLEPEVIIAGHGKNQKLYRCTKCGFTAKHRQYRSHIDYDCGTNPINHKTYRCTKCQNVFVSMKKYLTHFKDHGYKHLSCPECLKDFDTFTNLGQHLTQHVKQNFVRVKMITHAGKAMTKPDYQCKKCGKIIAFHKFFEHWELHINAQPTHPIKVTSRPNHKHGELHETIIKECIARLNKQPKECNHCHRWFKRVNECKRHIIEHLLADAYNQKHIYKELKCQVCEQGFAVPERYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIVCDLCGKKFQSKVSLGKHIEKHKSTEPITCKICNKIFYFDTSYRRHVRYFHEKTVIGYRCVICSERFDSLKLKWDHMWDIHKERKQKADCPICHQSFRKYADVRVHARLHHLTEVSVVNVKKKSMNPNINIDKYLRDQAKIKVGRMETLVVYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01526599;
- 90% Identity
- -
- 80% Identity
- -