Llea026292.1
Basic Information
- Insect
- Lithophane leautieri
- Gene Symbol
- -
- Assembly
- GCA_949152455.1
- Location
- OX424488.1:5440300-5455735[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.089 1.3e+03 0.3 0.1 22 49 320 347 314 351 0.86 2 4 0.012 1.8e+02 3.1 0.1 20 38 404 422 401 431 0.83 3 4 0.00014 2.1 9.3 0.1 13 47 986 1020 977 1024 0.87 4 4 9.1e-07 0.013 16.2 0.4 22 50 1055 1083 1051 1087 0.90
Sequence Information
- Coding Sequence
- ATGGCGGACACATCCAGAAAAAGGTCGAGAAAGTCGAAATTAGTGCCTCGAGAGTGTGCTGTAGGCGAAGATGATCTTGAATTGCAGGTTCCAGAGGCGAAAGTACCTAAAATCACTAAACCGACCACCAGACCTCAAAAGGTGATAGTAAAACCACCAGAGCCCATTATTTCCAAACCAGAAGCCTGTGACACAAGtgtcttaaaaaaaatcaatgccTCAGCCAAAGAAGACACAGTGCCACAATCTAATACATCACCAAGAAAATTCGAAATAAACATTGAAGTGGAATCTTGCGATGACGACGACGAATTTGCAGGAAAATGTGACGAAAATCATATAACAACGATTCATAAAGAGTCACTCCTCACGACAAAAGTACGAGCCGAACCTATAGCCCTCACTCGAGAAATTATAATACATGAAGCCGACAATATACTCAAGATTTCAACTAATGTTGCTGATAAAATCCTCAACATACACCTTCGAAATAGCATTGGATTTGAACATAAAGAGAGACTGGTACTGGATTGGCAAGAGAGAAAGATACAAGAAACTTTGGATGAGTGGCGTACGTGGCAGTTCCGTAGTTTTCATAGAGAAGAACCACTGTTCTATAAATGCTATATCTGTACAAAATCCTGGTGGCATTTAACAGACTTCCGGAACCATTTGTCTTCTGAACACGCTGATGATACAGCAGTTATAATTACTTgggagaaatatgaaacgcaTGAGGTCAATTTGATAGCGTACCGCATAAATAATTGGATGGTTGATGTAATAGATATTTATACAGAAGGACTGTGTTACCGCTGCGGGAAGGATTATTCTGCTCATGAGTTAGAGTCGAGGTACCAAGAGAAGTTTTACAAAAGTAAAGGTTGCACTAAGCAATTTTTCAGTTGTATGGGTCTAAGGGTCCACTTCTCTAGCTGTTCCGTGTGTAAGCATCAGGATAAGCCATTCAAATGTAATATATGTAAGTCAAGATATGATACAGTTGAGGAATTATATGACCATTTAGTATTGTCTCATTCCGTTCGGTCCGATATACCGATAATGGCTCATTATAAAAACTGCAAGCGCTGTTCAGAAAGGTTTTCTTGTCAATATTTGCACAATTGTGGTCAAAAGGGTCCTCATTCCGAGTGTCCTCACTGCCGACAGAGCTTCTCAAATGTCATGTCTTTGGAGATTCATATGGAACGGTCGAGTAAACCGTACAAATGTGAGGTTTGCAGAGCTGTGATGAAGTACAGCtgtatgaaatatgaacatATGTTGGCACATACAGACAATTATATGCTTGTTAGGAAGTGCGTGGCATGTGAGGGTTTGAATGTGTTTATTAATAATGAAGATGCCGTTCTCCATCGGTCATTGAAACATGAGTTCAAGGATACAAAACGGCAAAGTTATTTCCCGACAATTTTAGTACCATCGTCCTGCATTCATCAAAGTTTAGCAGAATCAGAATCGAAACAACAAGAATCGGTATTGGAGGAACAAGAATTAGTACTGGAAGGAGAAGAATCCGTACCTGAGGAAGAATCCGTACCAGAAGAAGAATCCGTACCAGAAGAAGAATCCGTACCAGAAGGAGAATCCGTACCAGAAGAAGAATCCATACCAGAAGAAGAATTGGTATCAAAACGTGAAAGAGAATCAGTTTCAGTGTGTGAACAGAGGTTATTACAAGCAGAGCTAGAATCAGCAACAGAATTTTTATTGGGATCTGTTGTCGTCAAGCAAGAGCCAGAAGACCCAGATGTATCAGAAGGTAGTCCAGGACTTGTAATCAAAGAAGAACCATTGGAGGAATTTGAAAACCAAATTCATGAAGATGAAAATAGAACTGAGAATTTTGAACACGAAATAAGTGTGAAAGAAGAATACGTAGAGGAAGAATACGATGAATATGAAGGAGATATTATCAAACTGAACTTTGATATAGAAGACTTATTAGTGAAACAAGAATCCATTCAAGAAGATGAAGATAATACTTCAGAACGGATAGAAGAGAACCGAGAAtcagaagatgatgatgattcagaAGAATTTTCACAGCGATTGAAAGACTCCATGCTAGAACCAGAAGTTATCATAGCAGGTCATGATATGAAAAATCAAAAATTATACAGATGTACTAAATGTGGATTCACAGGTAAACATAGACAATATAGAAATCACATAGACTATGACTGTGGTACAAACCCAATCAGACATAAAACATACAGATGcacaaaatgtcaaaatgtgTATGTgtccatgaaaaaatatttaacacattTCAAAGACCATGGATACAAGCACTTGTCCTGTCCGGAATGTCTGAAAGAATTCGACACATTCACAAATTTGGGGCAGCATTTGACACAacatgtaaaacaaaatttcgtTCGAGTGAAAATGATCACACATGCTGGCAAGGCCATGACGAAACCTGATTATCAATGCAAAAAGTGTGGAAAAATCATAgcttttcatgatttttttgaaCATTGGGAGTTGCATATAAATGCCCAGCCTACACATCCTATCAAAGTAACCTCTAGGCCGAACCATAAGCACGGAGAGTTGCATGAAACTATTATAAAGGAGTGTATTGctcGTTTGAACAAAAATCCCAAAGAATGCAACCACTGCCACCGCTGGTTCAAAAGAGTAAACGAATGCAAACGCCACATCattgaacatcttctatctgACGCATACAACCAGAAACACATCTATAAGGAACTCAAATGCCAAGTCTGTGAACAAGGTTTCGCTGTACCAGAGAGATACAAACAACATATGCGAGATCATGCCTCGCTGCCTGTGTACAAGTGTGAAATGTGTGACCGTACCTTTAGTGACTCTAGTAActttacaaaacataaaaaagtacaTAATTTGAAAGTGATTGTCTGTGATTTGTGCGGTAAAAAGTTCCAGTCAAAAGTGTCTTTGGAGAAACACATTGAGAAACACAAAAGCACGGAGCCAATTACATGTAAGATTTGCAACAAAATCTTCTACTTCGACACATCATATCGGCGCCACGTTCGGTACTTCCATGAAAAAACCGTTATCGGTTATCGTTGTGTTATCTGCAGTCAACGTTTCGACAGTTTGAAAACCAAATGGGATCATATGTGGGACGTCCATAAGGAGAGGAAGCAGAAAGCAGACTGCCCAATATGCTATCAGTCCTTCAGGAAGTACGCGGATGTCCGGGTCCATGCAAGGCTACACCATTTGACGGAAGTATCagttttaaatgtcaaaaaaaaatcaacaaatccCAATTTAGATATTGATAAGTATTTGAGAGATCCGGCTAAGATTAAAGTTGGAAGGATGGAGACTTTAGTTGTTTATGATTCAGATTAA
- Protein Sequence
- MADTSRKRSRKSKLVPRECAVGEDDLELQVPEAKVPKITKPTTRPQKVIVKPPEPIISKPEACDTSVLKKINASAKEDTVPQSNTSPRKFEINIEVESCDDDDEFAGKCDENHITTIHKESLLTTKVRAEPIALTREIIIHEADNILKISTNVADKILNIHLRNSIGFEHKERLVLDWQERKIQETLDEWRTWQFRSFHREEPLFYKCYICTKSWWHLTDFRNHLSSEHADDTAVIITWEKYETHEVNLIAYRINNWMVDVIDIYTEGLCYRCGKDYSAHELESRYQEKFYKSKGCTKQFFSCMGLRVHFSSCSVCKHQDKPFKCNICKSRYDTVEELYDHLVLSHSVRSDIPIMAHYKNCKRCSERFSCQYLHNCGQKGPHSECPHCRQSFSNVMSLEIHMERSSKPYKCEVCRAVMKYSCMKYEHMLAHTDNYMLVRKCVACEGLNVFINNEDAVLHRSLKHEFKDTKRQSYFPTILVPSSCIHQSLAESESKQQESVLEEQELVLEGEESVPEEESVPEEESVPEEESVPEGESVPEEESIPEEELVSKRERESVSVCEQRLLQAELESATEFLLGSVVVKQEPEDPDVSEGSPGLVIKEEPLEEFENQIHEDENRTENFEHEISVKEEYVEEEYDEYEGDIIKLNFDIEDLLVKQESIQEDEDNTSERIEENRESEDDDDSEEFSQRLKDSMLEPEVIIAGHDMKNQKLYRCTKCGFTGKHRQYRNHIDYDCGTNPIRHKTYRCTKCQNVYVSMKKYLTHFKDHGYKHLSCPECLKEFDTFTNLGQHLTQHVKQNFVRVKMITHAGKAMTKPDYQCKKCGKIIAFHDFFEHWELHINAQPTHPIKVTSRPNHKHGELHETIIKECIARLNKNPKECNHCHRWFKRVNECKRHIIEHLLSDAYNQKHIYKELKCQVCEQGFAVPERYKQHMRDHASLPVYKCEMCDRTFSDSSNFTKHKKVHNLKVIVCDLCGKKFQSKVSLEKHIEKHKSTEPITCKICNKIFYFDTSYRRHVRYFHEKTVIGYRCVICSQRFDSLKTKWDHMWDVHKERKQKADCPICYQSFRKYADVRVHARLHHLTEVSVLNVKKKSTNPNLDIDKYLRDPAKIKVGRMETLVVYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01526599;
- 90% Identity
- iTF_00906633;
- 80% Identity
- iTF_00906633;