Vger007003.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- bab1
- Assembly
- GCA_905340365.1
- Location
- HG996536.1:4872934-4875024[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-15 5.7e-12 44.9 0.1 4 45 353 394 350 394 0.92 2 2 0.0077 10 5.6 0.0 24 34 419 429 418 439 0.81
Sequence Information
- Coding Sequence
- ATGGCGAACGCGTCGCAACAGTATTGTCTCCGTTGGAACAACCACCGATCGAACTTGCTTACTGTCTTCGACGAACTACTGCAAAATGAGGCATTCACCGACGTTACCTTGGCTGTGGACGGTGGTCTCTCTGTAAAGTGCCACAAAATGGTCCTAGCAGCCTGTTCATCGTATTTCCAGACACTTTTTATCGATCTACCATGTAAACATCCGATCGTTGTACTCAAAGATGTGAAATATTGTGAGATCAAGGCGATATTAGAGTACATGTACCGTGGCGAGGTAAATGTCGCTCAGGAACAACTCGGCGGTTTATTAAAAGTTGCTGAAGTCTTAAAAGTGAAGGGTCTTGTTGAGGAAAACGGTTCGTCTCATGAACAACGAAACGAAGAACTCGAAACGTCGATGTCACCACCACCAGCGATCAGCACTAGTACAACCAACAGTATCGCGCATAGCAGTGGCCATGTTTCACCACCCCATTCAACCGGAAGTTCTTATAATCCATACGGTAAATCTACGGTGCCAATCGACAGAGGATGCATGTCTTTGCCGATGTGGGCATTGTCAGGACTTCCACTTCCGCAACATGCGACTTCCAGTCATCAGGCAAACTCTCAATCACATTCGCAACATTCCTCTATCGTGGGTACTTCTTACGACAACGGTTTCGAAACGTCATCGCCTATAAAtccaaaacgaaaaaaatattgtacgtCAAACGTCATGATGAATCGAGACACGCCGATATTGCGAACGGTTTTGGGTCAAGGACATGCCGATAGTTCACAGAACATGACCCTTATGCCACCAGACAGTCACGATAATAACTTCCGTACTAATGCCAATGGATCGTCAACTGAAAATGCTAGACGAGATAGCAGCGATCTTCCTAATTCCGAACCAGTTCATAGTCCTTACACCGATGTTTCCATGATAGACGAAGAAGACAAACAACCATCCCCTCAGCCCTATGTCGATACGAACGCAGGTGTGGTTAGTTACATCACAACCCAGAAACCCGAGTGGAAACGTTACAAACAATATACACGGCACGACATCATGTCAGCTATCGAGGCAGTGAGATCGGGAATGAGTGCATTGCAAGCAGCACGAAAGTACGGTGTCCCATCGCGTACACTTTACGATAAGGTAAAAAAACTTGGTATCACGACCTCTCGACCTTTTAAGCGTGGTTCGAACGGTGCTGGAGGAGCTTGTTTTCCCTATGGGATCGGTGGAAACGCAAACGGCAGCATTTATGGTATCAACAGCAGTACTCTATCAGAAAGCGAAAATGAAAACAGCAACGCTCTATACGAGAGTTCATCCACCATTTTGGAAACGAATTATGTTAAGAGCAGAGATACCTCGACCGAACGTGAATCCAACATGGAAACTGGTCAATCTAGTCCAACTTCAGGACATCATTTGATCAAAGAGGAACAACCTCAACAAAGGAACGACGATCAGGTTGAAGATCTTTCGGTAAATCGTAAGTCGGATATACGAGTAATAATGCCACCATCGTCGATCATCAAAGAGGAAGATGATATTTCCGATAACTCTAATCGTAATTGA
- Protein Sequence
- MANASQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGLSVKCHKMVLAACSSYFQTLFIDLPCKHPIVVLKDVKYCEIKAILEYMYRGEVNVAQEQLGGLLKVAEVLKVKGLVEENGSSHEQRNEELETSMSPPPAISTSTTNSIAHSSGHVSPPHSTGSSYNPYGKSTVPIDRGCMSLPMWALSGLPLPQHATSSHQANSQSHSQHSSIVGTSYDNGFETSSPINPKRKKYCTSNVMMNRDTPILRTVLGQGHADSSQNMTLMPPDSHDNNFRTNANGSSTENARRDSSDLPNSEPVHSPYTDVSMIDEEDKQPSPQPYVDTNAGVVSYITTQKPEWKRYKQYTRHDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGAGGACFPYGIGGNANGSIYGINSSTLSESENENSNALYESSSTILETNYVKSRDTSTERESNMETGQSSPTSGHHLIKEEQPQQRNDDQVEDLSVNRKSDIRVIMPPSSIIKEEDDISDNSNRN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01514243; iTF_01514906; iTF_01513565; iTF_01514749; iTF_01514078; iTF_01512108; iTF_01512265; iTF_01512755; iTF_01512909; iTF_01090079; iTF_01089915;
- 90% Identity
- iTF_01512108;
- 80% Identity
- iTF_01514906; iTF_01513565; iTF_01514749;