Vpen008902.1
Basic Information
- Insect
- Vespula pensylvanica
- Gene Symbol
- bab1
- Assembly
- GCA_014466175.1
- Location
- CM025344.1:8262111-8264210[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-15 4.8e-12 44.9 0.1 4 45 353 394 350 394 0.92 2 2 0.0063 8.5 5.6 0.0 24 34 419 429 418 439 0.81
Sequence Information
- Coding Sequence
- ATGGCGAACGCGTCGCAACAGTATTGTCTCCGTTGGAACAACCACCGATCGAACTTGCTTACTGTCTTCGACGAACTACTGCAAAATGAGGCATTCACCGACGTTACCTTGGCTGTGGACGGTGGTCTCTCTGTAAAGTGCCACAAAATGGTCCTAGCAGCCTGTTCATCGTATTTCCAGACACTTTTTATCGATCTACCATGTAAACATCCGATCGTTGTACTCAAAGATGTGAAATATTGCGAGATCAAGGCGATATTAGAGTACATGTACCGTGGCGAGGTAAATGTCGCTCAGGAACAACTCGGCGGTTTATTAAAAGTTGCTGAAGTCTTAAAAGTGAAGGGTCTTGTTGAGGAAAATGGTTCGTCTCATGAACAACGAAACGAAGAACTCGAAACGTCGATGTCACCACCACCAGCGATCAGCACTAGTACAACCAACAGTATCGCGCATAGCAGTGGCCATGTTTCACCACCCCATTCAACCGGAAGCTCTTATAATCCATACGGTAAATCTACGGTGCCGATCGACAGAGGATGCATGTCTTTGCCGATGTGGGCATTGTCAGGACTTCCACTTCCGCAACATGCGACTTCCAGTCATCAGGCAAACTCCCAGTCACATTCGCAACATTCCTCTATCGTGGGTACTTCTTACGACAACGGTTTCGAAACGTCATCGCCTATAAATCCAAAACGAAAAAAATATTGTACGTCAAACGTCATGATGAATCGAGACACGCCGATATTGCGAACGGTTTTGGGTCAAGGACATGCCGATAGTTCACAGAACATGACCCTTATGCCACCAGATAGTCACGATAATAACTTCCGTACTAATACCAATGGATCGTCAACTGAAAATGCTAGACGAGATAGCAGCGATCTTCCTAATTCCGAACCAGTTCATAGTCCTTACACCGATGTTTCCATGATAGACGAAGAAGACAAACAACCATCCCCTCAGCCCTATGTCGATACGAACGCAGGTGTGGTTAGTTACATCACAACCCAGAAACCCGAGTGGAAACGTTACAAACAATATACACGGCACGACATCATGTCAGCTATCGAGGCAGTGAGATCGGGAATGAGTGCATTGCAAGCAGCACGAAAGTACGGTGTCCCATCGCGTACACTTTACGATAAGGTAAAAAAACTTGGTATCACGACCTCTCGACCTTTTAAGCGTGGTTCGAACGGTGCTGGAGGAGCTTGTTTTCCCTATGGGATCGGTGGAAACGCAAACGGCAGCATTTATGGTATCAACAGCAGTACTCTATCAGAAAGCGAAAATGAAAACAGCAACGCTCTATACGAGAGTTCATCCACCATTTTGGAAACGAATTATGTTAAGAGCAGAGATACCTCGACCGAACGTGAATCCAACATGGAAACTGGTCAATCTAGTCCAACTTCAGGACATCATTTGATCAAAGAGGAACAACCTCAACAAAGGAACGACGATCAGGTTGAAGACCTTTCGGTAAATCGTAAGTCGGATATACGAGTAATAATGCCACCATCGTTGATCGTCAAAGAGGAAGATGATATTTCCGATAATTCTAATCGTAACTGA
- Protein Sequence
- MANASQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGLSVKCHKMVLAACSSYFQTLFIDLPCKHPIVVLKDVKYCEIKAILEYMYRGEVNVAQEQLGGLLKVAEVLKVKGLVEENGSSHEQRNEELETSMSPPPAISTSTTNSIAHSSGHVSPPHSTGSSYNPYGKSTVPIDRGCMSLPMWALSGLPLPQHATSSHQANSQSHSQHSSIVGTSYDNGFETSSPINPKRKKYCTSNVMMNRDTPILRTVLGQGHADSSQNMTLMPPDSHDNNFRTNTNGSSTENARRDSSDLPNSEPVHSPYTDVSMIDEEDKQPSPQPYVDTNAGVVSYITTQKPEWKRYKQYTRHDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGAGGACFPYGIGGNANGSIYGINSSTLSESENENSNALYESSSTILETNYVKSRDTSTERESNMETGQSSPTSGHHLIKEEQPQQRNDDQVEDLSVNRKSDIRVIMPPSLIVKEEDDISDNSNRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513393;
- 90% Identity
- iTF_01512108;
- 80% Identity
- iTF_01514243;