Vman007296.1
Basic Information
- Insect
- Vespa mandarinia
- Gene Symbol
- bab1
- Assembly
- GCA_014083535.1
- Location
- JACHAV010000003.1:4440369-4445770[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-15 5e-12 44.8 0.1 4 45 363 404 360 404 0.92 2 2 0.0043 8.9 5.6 0.0 24 34 429 439 428 449 0.81
Sequence Information
- Coding Sequence
- ATGGCGAGCGCATCGCAACAATATTGTCTCCGTTGGAACAACCACCGATCGAACTTGCTTACTGTCTTTGATGAACTTCTACAAAATGAGGCATTCACCGATGTTACCTTGGCTGTGGACGGTGGTCTCTCTGTAAAGTGTCACAAAATGGTCCTAGCAGCTTGTTCATCATATTTCCAGACGCTTTTTATCGATCTACCATGTAAACATCCGATCGTAGTACTCAAAGATGTGAAATATTGTGAGATCAAGGCAATATTAGAATACATGTATCGTGGAGAGGTAAATGTCGCCCAGGAACAACTCGCTGGTTTATTAAAAGTTGCTGAAGTTTTAAAAGTCAAGGGTCTTGTTGAGGAAAATGGTTCATCTCATGAACAACGAAACGAAGAACTCGAAACGTCGATGTCACCACCACCAGCGATCAGCACTAGCACAACCAACAGTATTGCGCATAGCAGTGGCCATATTTCACCACCCCATTCAACCGGAAGTTCTTATAATCCATACGGTAAATCATCTACGATGCCAATTGATAGAGGATGTATGTCCTTGCCGATGTGGGCATTGTCAGGACTTCCACTTCCACAACATGCAACTTCCAGTCATCAGGCAAGCTCTCAATCACATTCGCAACATTCCACTATCGTGGGTACTTCTTACGACAACGGTTTCGAAACGTCATCGCCCATAAAtccaaaacgaaaaaaatattgtacgtCAAATGTCATGATGAATCGAGACACGCCGATATTGCGAACAGTTTTGGGTCAAGGGCATGCTGATAGTTCACAGAACATGACCCTTATGCCACCAGATAGTCATGATAATAACTTCCGTACTAATGCCAATGGATCGTCAACTGAAAATTCCAGACGAGATAGCAGCGATCTTCCCAATTCTGAACCAGTTCATAGTCCTTACACCGACGTCTCCATGATAGACGAAGAAGACAAACAACCATCACCTCAACCCTACGTCGATACTAACGCAGGTACTGACGTATCTAATCCAATTGTAGGTGTGGTTAGTTATATCACAACCCAAAAGCCCGAATGGAAAcgttataaacaatatacaCGGCACGACATCATGTCAGCAATCGAGGCAGTAAGATCAGGAATGAGTGCATTGCAAGCGGCGAGAAAGTACGGTGTCCCATCGCGTACACTTTacgataaagtaaaaaaacttGGTATCACGACCTCCCGACCTTTTAAGCGTGGTTCGAACGGTGCTGGAGGAGCTTGTTTTCCCTATGGTATCGGTGGAAACGCAAACGGCAGCATTTATGGTATCAACAGTAGTACCCTATCGGAAAGTGAAAATGAAAACAGCAACGCCCTATACGAGAGTTCTTCCACCATTTTGGAAACGAATTACGTTAAGAGCAGGGATACTTCGACTGAACGTGAATCCAACATGGAAACTGGTCAATCTAGTCCAACTTCAGGACTTCATTTGATCAAAGAAGAACCTCAACAAAGGAACGACGATCAGGTTGAGGATCTTTCGGTAAATCGTAAGTCGGATATACGAGTAATAATACCACCATCGTCGAACATCAAAGAGGAAGATGATATTTCCGATAATTCTAATCgtaattga
- Protein Sequence
- MASASQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGLSVKCHKMVLAACSSYFQTLFIDLPCKHPIVVLKDVKYCEIKAILEYMYRGEVNVAQEQLAGLLKVAEVLKVKGLVEENGSSHEQRNEELETSMSPPPAISTSTTNSIAHSSGHISPPHSTGSSYNPYGKSSTMPIDRGCMSLPMWALSGLPLPQHATSSHQASSQSHSQHSTIVGTSYDNGFETSSPINPKRKKYCTSNVMMNRDTPILRTVLGQGHADSSQNMTLMPPDSHDNNFRTNANGSSTENSRRDSSDLPNSEPVHSPYTDVSMIDEEDKQPSPQPYVDTNAGTDVSNPIVGVVSYITTQKPEWKRYKQYTRHDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGAGGACFPYGIGGNANGSIYGINSSTLSESENENSNALYESSSTILETNYVKSRDTSTERESNMETGQSSPTSGLHLIKEEPQQRNDDQVEDLSVNRKSDIRVIIPPSSNIKEEDDISDNSNRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513393;
- 90% Identity
- iTF_01512108;
- 80% Identity
- iTF_01512909;